CX308941

Overview
NameCX308941
Unique NameCX308941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1323 contig Ccv1_Contig1323:297..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.159e-17
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    1 AGKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIP 147
            A KAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG   P
Sbjct:   73 AEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFGSP 121          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.432e-17
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 AGKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 138
            A KAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY+TYSGENTFG+
Sbjct:   74 AEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGA 119          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.095e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    1 AGKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 138
            A KAIFIFVDNVLPPTGA+MS IY+E K+EDGFLYVTYSGENTFGS
Sbjct:   73 AEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFGS 118          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_PHANO (Autophagy-related protein 8 OS=Phaeosphaeria nodorum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.844e-16
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 144
            KAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG  I
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFGEAI 119          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_CHAGB (Autophagy-related protein 8 OS=Chaetomium globosum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.024e-15
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 138
            KAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG+
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFGN 117          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.024e-15
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    1 AGKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 138
            A KAIF+FV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:   73 AEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_PODAN (Autophagy-related protein 8 OS=Podospora anserina GN=ATG8 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_PENCW (Autophagy-related protein 8 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg8 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_NEUCR (Autophagy-related protein 8 OS=Neurospora crassa GN=atg-8 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_NEOFI (Autophagy-related protein 8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg8 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX308941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ATG8F_ARATH4.159e-1781.63Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8E_ARATH5.432e-1782.61Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8G_ARATH7.095e-1786.96Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8_PHANO7.844e-1682.61Autophagy-related protein 8 OS=Phaeosphaeria nodor... [more]
ATG8_CHAGB1.024e-1584.09Autophagy-related protein 8 OS=Chaetomium globosum... [more]
ATG8A_ARATH1.024e-1582.61Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8_PODAN1.338e-1586.05Autophagy-related protein 8 OS=Podospora anserina ... [more]
ATG8_PENCW1.338e-1586.05Autophagy-related protein 8 OS=Penicillium chrysog... [more]
ATG8_NEUCR1.338e-1586.05Autophagy-related protein 8 OS=Neurospora crassa G... [more]
ATG8_NEOFI1.338e-1586.05Autophagy-related protein 8 OS=Neosartorya fischer... [more]

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Properties
Property NameValue
Genbank descriptionC21006C02Rv AbsLeaSub1 Citrus clementina cDNA clone C21006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308941 ID=CX308941; Name=CX308941; organism=Citrus clementina; type=EST; length=291bp
GCGGGAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTACAGG
TGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAAGATGGTTTTC
TTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCACATCCCAGTT
TAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGACCAC
ATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATATTCCTTTATCG
GGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATA
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