CX308948

Overview
NameCX308948
Unique NameCX308948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3840 contig Ccv1_Contig3840:919..1266. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPAC2_DANRE (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.439e-17
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = -1
Query:    1 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 318
            EL Q +   M      D+   TF L EEDHTL N++R+ + +   V FCGYSI HPS++++N R+QT  G PA E L++    L  +C+HV  TF   + +F+  E+
Sbjct:    3 ELGQKHALEMVRTDGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLNNLTDVCKHVLQTFEARMKEFKEQEE 109          
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPAC2_XENLA (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.103e-17
Identity = 41/107 (38.32%), Postives = 66/107 (61.68%), Query Frame = -1
Query:    1 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 318
            E E+     M      ++S  TF L EEDHTL N++R+ + ++P V FCGYSI HPS+ ++N R+QT  G PA E  +    EL+ +C+HV +TF  ++ +++  ++
Sbjct:    4 ETERKTTLEMVQAQGNEESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFRRGLNELVDVCQHVLNTFETSIKEYKEQKE 110          
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPAC2_HUMAN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = -1
Query:   13 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 318
            E E+     M   A  D+   TF L EEDHTL N++R+ + ++P V FCGY+  HPS++++N+R+QT G  PA E  +    ELM +C+HV   F  ++ D++
Sbjct:   20 EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122          
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPAC2_MOUSE (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus GN=Polr1d PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.013e-16
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -1
Query:    4 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 318
            E E+     M   A  D+   TF L EEDHTL N +R+ + ++P V FCGY+  HPS++++N+R+QT G  PA E  +    EL+ +C+HV   F  ++ D++  +
Sbjct:   20 EGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKK 125          
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPAC2_YEAST (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae GN=RPC19 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = -1
Query:   25 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAV 270
            D ++A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+  +NIR+QT G+  A + L+   ++LM +C  V S F + +
Sbjct:   57 DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKI 139          
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPAC2_BOVIN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.285e-15
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = -1
Query:   13 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 318
            E E+     M   A  D+   TF L EEDHTL N++R+ + ++P V FCGY+  HPS++++N+R+QT G  PA E  +    +LM +C+HV   F  ++ +++
Sbjct:   20 EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYK 122          
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPC19_DICDI (DNA-directed RNA polymerases I and III subunit rpc19 OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.683e-15
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:   22 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVD 258
            ATF  T+EDHTL NA+ + L ++P+V F GYSIPHPSD R+N+R+QT  +  A+E L     ++  + RH+  TF  A+D
Sbjct:   36 ATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLLQGLTDIKDISRHIFETFNNALD 115          
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPAC2_SCHPO (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe GN=rpc19 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.300e-14
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = -1
Query:   31 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQELMLMCRHVRSTFAK 282
            G   D ++ TF + +EDHTL N++R+ + ++P V FCGYSIPHPS+A++N R+QT     A +VL+    +L+ +C  V   F +
Sbjct:   27 GHSADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCDAVTEKFTE 111          
BLAST of CX308948 vs. ExPASy Swiss-Prot
Match: RPAC2_DROME (Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Drosophila melanogaster GN=l(2)37Cg PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.139e-13
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = -1
Query:   16 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDF 273
            GD+ N     TF  T E HTL NA++  + + P V FCGY+IPHP++ +++ R+Q+  D A ++LK   ++L  +C H   TF K + +F
Sbjct:    9 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAIDILKRGLEDLEGLCDHTIVTFEKEMAEF 98          
The following BLAST results are available for this feature:
BLAST of CX308948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RPAC2_DANRE5.439e-1740.19DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC2_XENLA7.103e-1738.32DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC2_HUMAN2.067e-1639.81DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC2_MOUSE6.013e-1637.74DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC2_YEAST1.750e-1545.78DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC2_BOVIN2.285e-1537.86DNA-directed RNA polymerases I and III subunit RPA... [more]
RPC19_DICDI8.683e-1547.50DNA-directed RNA polymerases I and III subunit rpc... [more]
RPAC2_SCHPO3.300e-1441.18DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC2_DROME2.139e-1338.89Probable DNA-directed RNA polymerases I and III su... [more]
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Properties
Property NameValue
Genbank descriptionC21006D02Rv AbsLeaSub1 Citrus clementina cDNA clone C21006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308948 ID=CX308948; Name=CX308948; organism=Citrus clementina; type=EST; length=348bp
TTTCTCACTTGTCCTGAAATCATCAACGGCCTTGGCAAAAGTGCTCCTCA
CGTGACGACACATCAGCATCAGCTCTTGGCACGAATCTTTCAACACCTCT
CTCGCTGGATCACCTGTTGTCTGGACTCTGATATTGACTCGAGCATCTGA
AGGATGAGGAATGCTGTATCCACAGAAAGTTACCCTTGGATCTTGATTTA
AGGTGAATCTGACAGCATTTGCCAGAGTATGATCTTCTTCTGTCAAAGAA
AAAGTTGCATTACTTTGATCCCCAAATGCGCCGTGCTCCATTGATTAACA
ATAGTTCTGCTCAAGTTCGAGTTAAGTTGAACTGCCCCTCGACCCCCG
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