CX308963

Overview
NameCX308963
Unique NameCX308963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308963_ssr353 microsatellite CX308963_ssr353:353..367. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11238 contig Ccv1_Contig11238:419..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.241e-39
Identity = 68/98 (69.39%), Postives = 84/98 (85.71%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANST 294
            I+ H +G WN LAK +GLKRTGKSCRLRWLNYL+PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKN+WRTR+QK  +   +   S+
Sbjct:   37 IANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSS 134          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.594e-38
Identity = 71/100 (71.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTF 300
            I+ H EG WN LA+ +GLKRTGKSCRLRWLNYL+PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+ LPGRTDNEIKNYWRTR+QK        ++STTF
Sbjct:   30 IANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQ-GDQSSSTTF 128          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.006e-38
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYW-RTRVQKQAR 267
            IS H EG WN +A+ +GLKRTGKSCRLRWLNYL+PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKNYW RTR+QK  +
Sbjct:   30 ISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIK 119          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.754e-33
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 1
Query:   22 RWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 297
            RW+ +AK SGL RTGKSCRLRW+NYL P +KRG +TPQE+  +LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A+  K   + T+
Sbjct:   31 RWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPVSPTS 122          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.323e-32
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 1
Query:   22 RWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 297
            RW+ +AK SGL RTGKSCRLRW+NYL P +KRG +TPQE+  +LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A+  K   + T+
Sbjct:   32 RWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPMSPTS 123          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.910e-31
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   16 EGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 276
            E RW+ +AK SGL RTGKSCRLRW+NYL P +KRG ++P E+  ILELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A+  K
Sbjct:   30 ERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERK 116          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.602e-30
Identity = 55/92 (59.78%), Postives = 76/92 (82.61%), Query Frame = 1
Query:   22 RWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 297
            RW+ +AK SGL RTGKSCRLRW+NYL P +K G ++P+E+  I+ELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A+  + D + ++
Sbjct:   32 RWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERRGDMSPSS 123          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.872e-29
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   25 WNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 291
            W ++ K +GL R GKSCRLRW+NYL+PD+K+G LT  E+  I+ELH+  GNRWSKIA H+PGRTDNEIKNYW T ++K+ + L ID N+
Sbjct:   37 WRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPNN 125          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.513e-28
Identity = 56/97 (57.73%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 291
            I +H EG W  L + +GL+R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID NS
Sbjct:   29 IRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNS 125          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.581e-28
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            +  H +G WN +AK++GLKR GKSCRLRW+NYL P+VKRGN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   33 VKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119          
The following BLAST results are available for this feature:
BLAST of CX308963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB21_ARATH7.241e-3969.39Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA3.594e-3871.00Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB40_ANTMA8.006e-3875.56Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB48_ARATH7.754e-3366.30Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH1.323e-3266.30Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ1.910e-3166.67Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ3.602e-3059.78Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MYB15_ANTMA8.872e-2960.67Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
MYB3_ARATH1.513e-2857.73Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
WER_ARATH2.581e-2859.77Transcription factor WER OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC21006F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308963 ID=CX308963; Name=CX308963; organism=Citrus clementina; type=EST; length=604bp
ATATCTCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGG
CTTGAAGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGA
AACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATT
CTTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCA
CTTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTG
TTCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTT
CAAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGA
CACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTA
ATTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCA
CAAATAATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCA
AGAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTT
CCTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTT
TCGG
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