CX308967

Overview
NameCX308967
Unique NameCX308967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX308967 vs. ExPASy Swiss-Prot
Match: GUN2_PERAE (Endoglucanase 2 (Fragment) OS=Persea americana GN=CEL2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.121e-12
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = -3 
Query:  289 SRSPNPNVLNGAILGGPXXXXXXXXXXXNYQQSEPATYINAPFVGAVAFFSSKTTTN 459
            S SPNPN+L GAILGGP           NYQQSEPATYINAP VGA+AFF++    N
Sbjct:   74 SSSPNPNILVGAILGGPDSRDSFSDDRNNYQQSEPATYINAPLVGALAFFAANPVAN 130
[Close]
BLAST of CX308967 vs. ExPASy Swiss-Prot
Match: GUN1_PERAE (Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.541e-11
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = -3 
Query:  292 SRSPNPNVLNGAILGGPXXXXXXXXXXXNYQQSEPATYINAPFVGAVAFFSSKTTT 459
            S  PNPN+L GAILGGP           NYQQSEPATYINAP VGA+AFF++   T
Sbjct:  438 SSPPNPNILVGAILGGPDNRDSFSDDRNNYQQSEPATYINAPLVGALAFFAANPVT 493
The following BLAST results are available for this feature:
BLAST of CX308967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GUN2_PERAE5.121e-1261.40Endoglucanase 2 (Fragment) OS=Persea americana GN=... [more]
GUN1_PERAE2.541e-1160.71Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionC21006G01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308967 ID=CX308967; Name=CX308967; organism=Citrus clementina; type=EST; length=461bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTAAAAAATTGATTCA
TTTTATTAAACGGTAAGAAAGTCAACATTAACTCAAAGTTGGCAAAGATA
TCTCTTTTGCCATAATTGATATATTACTTACCATATTACTCAAAAACTCA
AGAGAAGAATTATTAGAGGTTACAGTTCTGACGTGGAATTGGAAGCATTG
TAAACCAAACTTCTCAAATTCTCACATCACACAGGATAAGACAGATTCAC
GCCAATCCTCAAGAAAGAAACAAAGAACATTTTAGTTAATTTGTGGTGGT
TTTGGATGAGAAGAAAGCAACAGCACCAACAAACGGCGCATTGATGTATG
TAGCTGGTTCTGACTGCTGATAATTATTACGATCATCGGCAAAATTGTCT
CTATTATCAGGCCCACCTAATATAGCTCCATTGAGAACATTTGGATTGGG
TGATCTAGAGT
back to top