CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ARATH (Chorismate synthase, chloroplastic OS=Arabidopsis thaliana GN=EMB1144 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.096e-37
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = -1
Query:    1 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 237
            +GT+FRV+TFGESHGGGVGCIIDGCPPRIPL+E+D+Q DLDRRRPGQSRITTPRKETDTC+I SGVSEG+TTGTPIHVF
Sbjct:   55 YGTHFRVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRRRPGQSRITTPRKETDTCRISSGVSEGMTTGTPIHVF 133          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC2_SOLLC (Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum GN=CS2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.804e-36
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG YFRVTTFGESHGGGVGCIIDGCPPR+PLSE+DMQV+LDRRRPGQSRITTPRKETDTCKI SG ++G+TTG+PI V
Sbjct:   53 FGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSRITTPRKETDTCKISSGTADGLTTGSPIKV 130          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC1_SOLLC (Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.804e-36
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG YFRVTTFGESHGGGVGCIIDGCPPR+PLSE+DMQV+LDRRRPGQSRITTPRKETDTCKI SG ++G+TTG+PI V
Sbjct:   59 FGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSRITTPRKETDTCKISSGTADGLTTGSPIKV 136          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CORSE (Chorismate synthase, chloroplastic OS=Corydalis sempervirens PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.346e-35
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  F+VTT+GESHGGGVGC+IDGCPPR P+SEAD+Q DLDRRRPGQSRITTPRKETDTCKIYSGV++G TTG+PIH+
Sbjct:   63 FGKVFQVTTYGESHGGGVGCVIDGCPPRFPISEADIQSDLDRRRPGQSRITTPRKETDTCKIYSGVADGFTTGSPIHI 140          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CYAA5 (Chorismate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=aroC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.240e-30
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHGGGVG IIDGCPPR+ LSE+D+Q DLDRRRPGQS+ITTPRKETDTC+I SGV +G T GTPI +
Sbjct:    5 FGHLFRITTFGESHGGGVGVIIDGCPPRLDLSESDIQGDLDRRRPGQSKITTPRKETDTCEIISGVFQGKTLGTPIAI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CYAP8 (Chorismate synthase OS=Cyanothece sp. (strain PCC 8801) GN=aroC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.743e-29
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHGGGVG +IDGCPPR+ +SE+D+Q DLDRRRPGQS+ITTPR E+DTC+I SGV EG T GTPI +
Sbjct:    5 FGHLFRITTFGESHGGGVGVVIDGCPPRLEISESDIQYDLDRRRPGQSKITTPRHESDTCEIISGVFEGKTLGTPIAI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SYNY3 (Chorismate synthase OS=Synechocystis sp. (strain PCC 6803) GN=aroC PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.981e-29
Identity = 57/78 (73.08%), Postives = 66/78 (84.62%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG+ FR+TTFGESHGGGVG IIDGCPPR+ +S  ++QVDLDRRRPGQS+ITTPRKE D C+I SGV EG T GTPI +
Sbjct:    5 FGSLFRITTFGESHGGGVGVIIDGCPPRLEISPEEIQVDLDRRRPGQSKITTPRKEADQCEILSGVFEGKTLGTPIAI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SYNJA (Chorismate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.981e-29
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  F VTT+GESHGG VG ++DGCPPR+PLSEAD+Q +LDRRRPGQS ITTPR+E D C+I SGV +G T GTPIH+
Sbjct:    7 FGVLFCVTTYGESHGGAVGVVVDGCPPRLPLSEADIQAELDRRRPGQSHITTPRQEADRCQILSGVFQGFTLGTPIHI 84          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CYAP4 (Chorismate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=aroC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.981e-29
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTTFGESHGGGVG +IDGCPP + +S+A++Q +LDRRRPGQSRITTPR+ETDTC+I SGV EG T GTPI +
Sbjct:    5 FGHLFRVTTFGESHGGGVGVVIDGCPPLLEISQAEIQAELDRRRPGQSRITTPRQETDTCEILSGVFEGKTLGTPIAI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SYNJB (Chorismate synthase OS=Synechococcus sp. GN=aroC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.361e-28
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  F VTT+GESHGG VG ++DGCPPR+PLSEAD+Q +LDRRRPGQS ITTPR+E D C+I SGV +G T GTPIH+
Sbjct:    7 FGVLFCVTTYGESHGGAVGVVVDGCPPRLPLSEADIQAELDRRRPGQSPITTPRQEADRCQILSGVFQGFTLGTPIHI 84          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_ARATH2.096e-3787.34Chorismate synthase, chloroplastic OS=Arabidopsis ... [more]
AROC2_SOLLC8.804e-3685.90Chorismate synthase 2, chloroplastic OS=Solanum ly... [more]
AROC1_SOLLC8.804e-3685.90Chorismate synthase 1, chloroplastic OS=Solanum ly... [more]
AROC_CORSE3.346e-3582.05Chorismate synthase, chloroplastic OS=Corydalis se... [more]
AROC_CYAA53.240e-3076.92Chorismate synthase OS=Cyanothece sp. (strain ATCC... [more]
AROC_CYAP82.743e-2973.08Chorismate synthase OS=Cyanothece sp. (strain PCC ... [more]
AROC_SYNY37.981e-2973.08Chorismate synthase OS=Synechocystis sp. (strain P... [more]
AROC_SYNJA7.981e-2970.51Chorismate synthase OS=Synechococcus sp. (strain J... [more]
AROC_CYAP47.981e-2973.08Chorismate synthase OS=Cyanothece sp. (strain PCC ... [more]
AROC_SYNJB1.361e-2870.51Chorismate synthase OS=Synechococcus sp. GN=aroC P... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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