CX309002

Overview
NameCX309002
Unique NameCX309002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14574 contig Ccv1_Contig14574:717..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.849e-60
Identity = 110/156 (70.51%), Postives = 124/156 (79.49%), Query Frame = -3
Query:    3 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYN 470
            QL+NFYQNHRRYVKSRND QL+   +  +   C PED    G+PIVPCGL+AWSLFNDTY+FSRN +QL VNK GI+WKSDR++KFGK VFP NFQ G  IGG  LN S PLS+QEDLIVWMRTAALPTFRKLYGKIE DL   D I V+L+NNYN
Sbjct:  126 QLENFYQNHRRYVKSRNDAQLRSPKEEHDVKTCAPEDNV-GGEPIVPCGLVAWSLFNDTYSFSRNSQQLLVNKKGISWKSDRENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYN 280          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.198e-59
Identity = 107/156 (68.59%), Postives = 125/156 (80.13%), Query Frame = -3
Query:    3 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYN 470
            QL+N+YQNHRRYVKSR D QL+      ET  C PEDT   G+PIVPCGL+AWSLFNDTY F+RN ++L VNK  I+WKSDR+ KFGK VFP NFQ G+LIGG  L++ IPLS+QEDLIVWMRTAALPTFRKLYGKI+ DL+  D I V+L+NNYN
Sbjct:  129 QLENYYQNHRRYVKSRQDGQLRSPKDEHETKSCAPEDTL-GGQPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRESKFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYN 283          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.487e-59
Identity = 109/156 (69.87%), Postives = 124/156 (79.49%), Query Frame = -3
Query:    3 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYN 470
            QL+NFYQNHRRYVKSR+D QL+     ++   C+PED    G+PIVPCGLIAWSLFNDTY  SRN + LTVNK GIAWKSD++HKFGK VFP NFQ G L GGA L+ + PLS QEDLIVWMRTAALPTFRKLYGKIE DLE+ + I V L+NNYN
Sbjct:  127 QLENFYQNHRRYVKSRSDSQLRSVKDENQIDACKPEDDF-GGQPIVPCGLIAWSLFNDTYVLSRNNQGLTVNKKGIAWKSDKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGKIESDLEKGENIQVTLQNNYN 281          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 5.947e-59
Identity = 109/156 (69.87%), Postives = 122/156 (78.21%), Query Frame = -3
Query:    3 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYN 470
            QL+NFYQNHRRYVKSR+D QL+     ++ S C+PED    G+PIVPCGLIAWSLFNDTY  SRN   L VNK GIAWKSD++HKFG +VFP NFQ G + GGA L+  IPLS+QEDLIVWMRTAALPTFRKLYGKIE DLE  D I V L NNYN
Sbjct:  126 QLENFYQNHRRYVKSRSDSQLRSTKYENQISACKPEDDV-GGQPIVPCGLIAWSLFNDTYALSRNNVSLAVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYN 280          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.260e-58
Identity = 106/156 (67.95%), Postives = 128/156 (82.05%), Query Frame = -3
Query:    3 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYN 470
            QLDN+YQNHRRYVKSR+D+QL    + S TS CEPE+++ +G PIVPCGLIAWS+FNDT+TFSR + +L V++N IAWKSDR+HKFGK V+P NFQNGTLIGGA L+  IPLS QED IVWMR AAL +FRKLYG+IE DLE   +++V L NNYN
Sbjct:  123 QLDNYYQNHRRYVKSRSDQQLLHGLEYSHTSSCEPEESS-NGLPIVPCGLIAWSMFNDTFTFSRERTKLNVSRNNIAWKSDREHKFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGKVVEVNLMNNYN 277          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50A_CHICK (Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.807e-23
Identity = 73/154 (47.40%), Postives = 88/154 (57.14%), Query Frame = -3
Query:   57 LDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDT---YTFSRNKRQ-LTVNKNGIAWKSDRDHKFGKEVFPSN----FQNGTLIGG----AHLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKIE 467
            L NFYQNHRRYVKSR+D QL     S  + + +CEP  T  D KPI PCG IA S+FNDT   Y    + R  +T+ K GIAW +D++ KF       N    FQ  T         ++ +S P +     ED IVWMRTAALPTFRKLY  IE
Sbjct:  136 LSNFYQNHRRYVKSRDDSQLNGDNSSLLNPSKECEPYRTNED-KPIAPCGAIANSMFNDTLELYHIENDTRTAITLIKKGIAWWTDKNVKFRNPKGDGNLTALFQGTTKPVNWPKPVYMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIE 288          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50A_PONAB (Cell cycle control protein 50A OS=Pongo abelii GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.998e-22
Identity = 68/155 (43.87%), Postives = 84/155 (54.19%), Query Frame = -3
Query:   57 LDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTF-----SRNKRQLTVNKNGIAWKSDRDHKFG--------KEVFPSNFQNGTLIGGAHLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKIE 467
            L NFYQNHRRYVKSR+D QL   S    + + +CEP     D KPI PCG IA S+FNDT              + + K GIAW +D++ KF         KE F    +    +   ++ +S P +     ED IVWMRTAALPTFRKLY  IE
Sbjct:  124 LSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLKERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIE 277          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50A_RAT (Cell cycle control protein 50A OS=Rattus norvegicus GN=Tmem30a PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.409e-22
Identity = 69/158 (43.67%), Postives = 85/158 (53.80%), Query Frame = -3
Query:   57 LDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ-------LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTLIGGAHL--------NESIPLSKQEDLIVWMRTAALPTFRKLYGKIE 467
            L NFYQNHRRYVKSR+D QL     +  + + +CEP     D KPI PCG IA S+FNDT        +       + + K GIAW +D++ KF    GK+     F++ T     H         +ES      ED IVWMRTAALPTFRKLY  IE
Sbjct:   88 LSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDTLELFLVANESDPKPVPILLKKKGIAWWTDKNVKFRNPPGKDSLQEKFKDTTKPVNWHKPVYELDPDDESNNGFINEDFIVWMRTAALPTFRKLYRLIE 244          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50A_HUMAN (Cell cycle control protein 50A OS=Homo sapiens GN=TMEM30A PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.452e-22
Identity = 68/155 (43.87%), Postives = 85/155 (54.84%), Query Frame = -3
Query:   57 LDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTF-----SRNKRQLTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTL----IGGAHLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKIE 467
            L NFYQNHRRYVKSR+D QL   S    + + +CEP     D KPI PCG IA S+FNDT              + + K GIAW +D++ KF    G +     F+  T     +   ++ +S P +     ED IVWMRTAALPTFRKLY  IE
Sbjct:  124 LSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIE 277          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50A_MOUSE (Cell cycle control protein 50A OS=Mus musculus GN=Tmem30a PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.692e-21
Identity = 68/158 (43.04%), Postives = 84/158 (53.16%), Query Frame = -3
Query:   57 LDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ-------LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTLIGGAHL--------NESIPLSKQEDLIVWMRTAALPTFRKLYGKIE 467
            L NFYQNHRRYVKSR+D QL     +  + + +CEP     D +PI PCG IA S+FNDT        +       + + K GIAW +D++ KF    GKE     F++       H         +ES      ED IVWMRTAALPTFRKLY  IE
Sbjct:  124 LSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPYRRNED-RPIAPCGAIANSMFNDTLELYLVANESDPKPIPIPLKKKGIAWWTDKNVKFRNPPGKESLEEKFKDTIKPVNWHKAVYELDPEDESNNGFINEDFIVWMRTAALPTFRKLYRLIE 280          
The following BLAST results are available for this feature:
BLAST of CX309002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ALIS5_ARATH1.849e-6070.51ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS4_ARATH1.198e-5968.59Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS1_ARATH3.487e-5969.87ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS3_ARATH5.947e-5969.87ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS2_ARATH2.260e-5867.95Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
CC50A_CHICK1.807e-2347.40Cell cycle control protein 50A OS=Gallus gallus GN... [more]
CC50A_PONAB1.998e-2243.87Cell cycle control protein 50A OS=Pongo abelii GN=... [more]
CC50A_RAT3.409e-2243.67Cell cycle control protein 50A OS=Rattus norvegicu... [more]
CC50A_HUMAN4.452e-2243.87Cell cycle control protein 50A OS=Homo sapiens GN=... [more]
CC50A_MOUSE1.692e-2143.04Cell cycle control protein 50A OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC21007B11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309002 ID=CX309002; Name=CX309002; organism=Citrus clementina; type=EST; length=472bp
GTGTTGTAGTTGTTTTCCAATATCACATCTATAATATCATTCTCTTCGAG
ATCCACCTCTATTTTCCCATACAACTTCCTGAAAGTGGGCAAAGCTGCTG
TCCGCATCCAAACTATAAGGTCCTCTTGCTTACTCAATGGTATGGATTCA
TTAAGATGTGCACCACCTATCAGAGTCCCATTTTGGAAGTTGCTAGGAAA
AACTTCTTTGCCAAACTTGTGATCCCTATCACTCTTCCATGCGATACCGT
TCTTGTTCACTGTCAACTGTCTCTTGTTGCGGGAAAAAGTGTATGTATCG
TTAAACAAACTCCAAGCAATAAGGCCACAAGGGACAATGGGCTTTCCATC
TGGGGTGGTATCTTCGGGCTCACACTGAGATGTTTCACTTGTTTTACTCC
GTTTTTTCAACTGCTCATCATTTCGGCTCTTAACATATCTGCGATGATTC
TGGTAGAAATTATCGAGTTGAT
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