CX309040

Overview
NameCX309040
Unique NameCX309040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14477 contig Ccv1_Contig14477:205..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.182e-21
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CCNSGNCG T FSKFFKDR PD YSYPKDD TSTFTCP GT+YKVVFCP
Sbjct:  177 CCNSGNCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFCP 225          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.872e-18
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CCNSG+CGPT +S+FFK R PD YSYPKDD  STFTC  GTDY+VVFCP
Sbjct:  154 CCNSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFCP 202          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.058e-16
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 147
            CC  G CGPT FSKFFK R PD YSYP+DD TSTFTCP G T+Y+V+FCP
Sbjct:  177 CCTQGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 226          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 147
            CC  G CGPT  SKFFK R PD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:  177 CCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.585e-16
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 147
            CC  G CGPT  S+FFK R PD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:  169 CCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 218          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.585e-16
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 147
            CC  G CGPT  S+FFK R PD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:  177 CCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.988e-16
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 CCNSG--NCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC +G  +CGPT  S+FFK+R PD YSYP+DD TS FTCP+GT+Y+VVFCP
Sbjct:  176 CCTNGPGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFCP 226          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: NP24_SOLLC (Protein NP24 OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.821e-16
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 147
            CC  G CGPT  SKFFK R PD YSYP+DD TSTFTCP G T+Y+VVFCP
Sbjct:  177 CCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 226          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: IAAT_MAIZE (Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.821e-16
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 CC---NSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC    + NC PT +S++FK + PD YSYPKDDATSTFTCP GT+YKVVFCP
Sbjct:  155 CCVGSAANNCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.972e-15
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 CC---NSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC    + +C PT +S++FK + PD YSYPKDDATSTFTCP GT+YKVVFCP
Sbjct:  176 CCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227          
The following BLAST results are available for this feature:
BLAST of CX309040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TLP_ACTDE6.182e-2185.71Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
P21_SOYBN2.872e-1875.51Protein P21 OS=Glycine max PE=1 SV=1[more]
OSMO_TOBAC2.058e-1672.00Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
OS81_SOLCO3.511e-1672.00Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
TPM1_SOLLC4.585e-1670.00Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
OS13_SOLCO4.585e-1670.00Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
PRR1_TOBAC5.988e-1666.67Pathogenesis-related protein R major form OS=Nicot... [more]
NP24_SOLLC7.821e-1672.00Protein NP24 OS=Solanum lycopersicum PE=1 SV=2[more]
IAAT_MAIZE7.821e-1667.31Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 S... [more]
ZEAM_MAIZE2.972e-1565.38Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC21007F09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309040 ID=CX309040; Name=CX309040; organism=Citrus clementina; type=EST; length=378bp
TGTTGCAATTCAGGCAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAA
GGATAGGGGCCCGGATGTTTACAGTTACCCTAAGGATGACGCTACCAGCA
CATTTACTTGCCCGACTGGGACAGACTACAAGGTTGTATTCTGCCCCTGA
AGCATTTTTTTTCAGGGGTAGAAATGGAAATAGAAAACTATACGACATAG
CCTTCTATATCTGTTATAATATTGGAATAAGGACGTGTGGTCTTCACTGC
CATAGAGCTGGAGCAGGCACATGTAGTTATGTGCGTGTATGAACTATAAT
TTGTCCGTGAATTAAAAGGAGAATAACTGANAAAAAAAAAAAAAAAAAAA
AAAGTTAAAAAAAAAAAAAAAAAAAAAA
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