CX309041

Overview
NameCX309041
Unique NameCX309041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6239 contig Ccv1_Contig6239:394..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB13C_ARATH (ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.753e-32
Identity = 67/97 (69.07%), Postives = 82/97 (84.54%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSS 289
            ILVDG NI + P+R+LR   AVVPQSPFLF+GSLRDNLDP  +++D +IW +L+KC VK  VE+V GL+++VKESG SFSVGQRQL+CLARALLKSS
Sbjct: 1016 ILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSS 1112          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB10C_ARATH (ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.715e-21
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = -3
Query:    2 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 298
            G  I+VDG++I    V DLR RF ++PQ P LF G++R NLDP   + D +IW VL KC +KE V+    GL++ V E G ++S+GQRQL CL RA+L+ S
Sbjct: 1198 GGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRS 1298          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP2_MOUSE (Canalicular multispecific organic anion transporter 1 OS=Mus musculus GN=Abcc2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.213e-20
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = -3
Query:    2 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSS 298
            G  I++DG++I +  + DLRGR  ++PQ P LF G+LR NLDPF+   D +IW  LE  H+K  V    +GL   V E G + S+GQRQL+CL RA+L+ S
Sbjct: 1353 GGQIIIDGIDIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQLGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKS 1453          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB7C_ARATH (ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.808e-20
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG+NI+   + DLR R +++PQ P +FEG++R NLDP     D +IW  L+KC + +E+  + + L++ V E+G ++SVGQRQL+CL R LLK S
Sbjct: 1299 IRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRS 1396          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB14C_ARATH (ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.808e-20
Identity = 45/101 (44.55%), Postives = 68/101 (67.33%), Query Frame = -3
Query:    2 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 298
            G  I++DG++I    + DLR RF ++PQ P LFEG++R N+DP     D +IW  LE+C +K+ V  +   L++ V ++G ++SVGQRQL+CL R +LK S
Sbjct: 1352 GGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRS 1452          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP2_HUMAN (Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.891e-20
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = -3
Query:    2 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSS 298
            G  I++DG++I +  + DLR +  ++PQ P LF GSLR NLDPF+   D +IW  LE  H+K  V +  +GL   V E+G + S+GQRQL+CL RALL+ S
Sbjct: 1355 GGQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLGLSHEVTEAGGNLSIGQRQLLCLGRALLRKS 1455          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB6C_ARATH (ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.891e-20
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG+NI++  + DLR R +++PQ P +FEG++R NLDP     D +IW  L+ C + +EV  + + L++ V E+G ++SVGQRQL+CL R LLK S
Sbjct: 1277 IRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRS 1374          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB4C_ARATH (ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.891e-20
Identity = 45/101 (44.55%), Postives = 68/101 (67.33%), Query Frame = -3
Query:    2 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 298
            G  I++DG++I    + DLR RF ++PQ P LFEG++R N+DP     D +IW  LE+C +K+ V  +   L++ V ++G ++SVGQRQL+CL R +LK S
Sbjct: 1329 GGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRS 1429          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP5_MOUSE (Multidrug resistance-associated protein 5 OS=Mus musculus GN=Abcc5 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 46/99 (46.46%), Postives = 69/99 (69.70%), Query Frame = -3
Query:    8 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLK 298
            G  I +DG+ I +  + DLR + A++PQ P LF G++R NLDPF+   + +IW  LE+ H+KE +    + LE+ V E+G +FSVG+RQL+C+ARALL+
Sbjct: 1247 GGCIKIDGIRISDIGLADLRSKLAIIPQEPVLFSGTVRSNLDPFNQYTEDQIWDALERTHMKECIAQLPLKLESEVMENGDNFSVGERQLLCIARALLR 1345          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABCC3_DICDI (ABC transporter C family member 3 OS=Dictyostelium discoideum GN=abcC3 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.517e-19
Identity = 46/96 (47.92%), Postives = 70/96 (72.92%), Query Frame = -3
Query:    8 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 289
            IL+DG NI    ++DLR   A++PQ P LF G+LR+N+DPF+   D ++WSVL+   + +  +++  GL++ V E+G ++SVGQRQL+CLARALL+
Sbjct: 1120 ILIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENIDPFNEKTDDQLWSVLKDIQLHDVAKSLEGGLDSKVTENGDNWSVGQRQLLCLARALLR 1215          
The following BLAST results are available for this feature:
BLAST of CX309041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
AB13C_ARATH7.753e-3269.07ABC transporter C family member 13 OS=Arabidopsis ... [more]
AB10C_ARATH4.715e-2149.50ABC transporter C family member 10 OS=Arabidopsis ... [more]
MRP2_MOUSE5.213e-2047.52Canalicular multispecific organic anion transporte... [more]
AB7C_ARATH6.808e-2045.92ABC transporter C family member 7 OS=Arabidopsis t... [more]
AB14C_ARATH6.808e-2044.55ABC transporter C family member 14 OS=Arabidopsis ... [more]
MRP2_HUMAN8.891e-2047.52Canalicular multispecific organic anion transporte... [more]
AB6C_ARATH8.891e-2045.92ABC transporter C family member 6 OS=Arabidopsis t... [more]
AB4C_ARATH8.891e-2044.55ABC transporter C family member 4 OS=Arabidopsis t... [more]
MRP5_MOUSE1.161e-1946.46Multidrug resistance-associated protein 5 OS=Mus m... [more]
ABCC3_DICDI1.517e-1947.92ABC transporter C family member 3 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC21007F11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309041 ID=CX309041; Name=CX309041; organism=Citrus clementina; type=EST; length=300bp
TAGAAGACTTGAGAAGAGCACGTGCAAGACATATAAGCTGCCTTTGCCCA
ACAGAAAATGAAATCCCAGATTCCTTCACAAACGTCTCCAGTCCCACTGC
TTCTACTTCCTCTTTGACATGGCATTTCTCCAAAACACTCCAGATTTTTA
AGTCATCATTCATGTGAAATGGGTCTAAATTATCCCTTAAAGACCCCTCA
AACAAGAAGGGGCTCTGTGGAACAACAGCAAACCGTCCCCGGAGATCTCT
CACAGGAGTATTGATTATGTTGAGTCCATCCACCAAAATTGTCCACCCCG
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