CX309065

Overview
NameCX309065
Unique NameCX309065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14247 contig Ccv1_Contig14247:11..388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.929e-22
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MGI+FTR+FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.929e-22
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MGI+FTR+FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG  F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG  F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG  F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG  F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 39/54 (72.22%), Postives = 51/54 (94.44%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+ F++LFS+LFG+KE RIL++GLD AGKTT+LY+L++GEVV+TIPTIGFNVE
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 9.274e-17
Identity = 38/54 (70.37%), Postives = 50/54 (92.59%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  ++LFS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVE
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 38/54 (70.37%), Postives = 50/54 (92.59%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  ++LFS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVE
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.698e-16
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+ FT+LFS LF  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
The following BLAST results are available for this feature:
BLAST of CX309065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ARF3_ARATH1.929e-2294.44ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP1.929e-2294.44ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL1_RAT3.187e-1777.78ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE3.187e-1777.78ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_HUMAN3.187e-1777.78ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN3.187e-1777.78ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARF_ASHGO3.187e-1772.22ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF1_YEAST9.274e-1770.37ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF2_YEAST1.211e-1670.37ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF_VIGUN2.698e-1672.22ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]

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Properties
Property NameValue
Genbank descriptionC21008A11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309065 ID=CX309065; Name=CX309065; organism=Citrus clementina; type=EST; length=378bp
GCGGGGAAAACAACAATTAAACAAACCCCCCAAAACTTTCATCTTTTTTA
TTTTTTTATAACTCAAAAGTCTCAACAAATCTCGCAAGCAGACCCTCTTC
CTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGATCCAATACAT
AATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATCACTAAGAAT
ACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTCTCTTCGCTC
TTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGACAATGCTGG
CAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTGTGTCAACTA
TTCCAACTATTGGATTTAATGTGGAGAC
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