CX309069

Overview
NameCX309069
Unique NameCX309069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig974 contig Ccv1_Contig974:1..394. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_NEMVE (Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.220e-30
Identity = 65/130 (50.00%), Postives = 97/130 (74.62%), Query Frame = -3
Query:    3 KTKQYHQ-KSPQYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK   Q KS QYE+I+KKN+QMY LLAI L+LCP  + ++E V+SQLREK  EKM ++Q+ D     +++E FSY+CPKF++P  P+F+ P  NYN++ + LQLK+F+ EV QQ ++  +RS+LK+Y++
Sbjct:  310 RTKNMLQTKSYQYEEIMKKNDQMYNLLAIALTLCP--QQLDENVHSQLREKCTEKMQKLQKGD---LQMFEECFSYSCPKFVSPVPPNFDAPPANYNREPFNLQLKVFMNEVAQQSMIPVIRSYLKLYTT 434          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_XENLA (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus laevis GN=eif3l PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.726e-29
Identity = 64/130 (49.23%), Postives = 99/130 (76.15%), Query Frame = -3
Query:    3 KTKQYHQKSP-QYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK   Q++  +YE I K+NEQM+ALL+I L++ P    ++E++++QLREKYG+KM+RMQ+ D +   IY+ELF+YACPKF++P  P+++    NY+++ Y  QLK+FL EV+QQ  LS +RSFLK+Y++
Sbjct:  343 RTKSMFQRTTYKYEMINKQNEQMHALLSIALTMYP--MRIDESIHTQLREKYGDKMLRMQKGDAQ---IYEELFNYACPKFLSPVVPNYDNVNPNYHKEPYLQQLKVFLDEVQQQAQLSTIRSFLKLYTT 467          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_XENTR (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus tropicalis GN=eif3l PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.560e-29
Identity = 64/130 (49.23%), Postives = 98/130 (75.38%), Query Frame = -3
Query:    3 KTKQYHQKSP-QYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK   Q++  +YE I K+NEQM+ LLAI L++ P    ++E++++QLREKYG+KM+RMQ+ D +   IY+ELF+YACPKF++P  P+++    NY+++ Y  QLK+FL EV+QQ  LS +RSFLK+Y++
Sbjct:  343 RTKSMFQRTTYKYEMINKQNEQMHGLLAIALTMYP--MRIDESIHTQLREKYGDKMLRMQKGDAQ---IYEELFNYACPKFLSPVVPNYDNVHPNYHKEPYLQQLKVFLDEVQQQAQLSTIRSFLKLYTT 467          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_MOUSE (Eukaryotic translation initiation factor 3 subunit L OS=Mus musculus GN=Eif3l PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.767e-28
Identity = 63/130 (48.46%), Postives = 97/130 (74.62%), Query Frame = -3
Query:    3 KTKQYHQKSP-QYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK   Q++  +YE I K+NEQM+ALLAI L++ P    ++E+++ QLREKYG+KM+RMQ+ D +   +Y+ELFSYACPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y++
Sbjct:  345 RTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYP--MRIDESIHLQLREKYGDKMLRMQKGDPQ---VYEELFSYACPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTT 469          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_CHICK (Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus GN=EIF3L PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.767e-28
Identity = 63/130 (48.46%), Postives = 97/130 (74.62%), Query Frame = -3
Query:    3 KTKQYHQKSP-QYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK   Q++  +YE I K+NEQM+ALLAI L++ P    ++E+++ QLREKYG+KM+RMQ+ D +   +Y+ELFSYACPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y++
Sbjct:  345 RTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYP--MRIDESIHLQLREKYGDKMLRMQKGDAQ---VYEELFSYACPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFADEVQQQAQLSTIRSFLKLYTT 469          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_PANTR (Eukaryotic translation initiation factor 3 subunit L OS=Pan troglodytes GN=EIF3L PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.937e-28
Identity = 62/130 (47.69%), Postives = 97/130 (74.62%), Query Frame = -3
Query:    3 KTKQYHQKSP-QYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK   Q++  +YE I K+NEQM+ALLAI L++ P    ++E+++ QLREKYG+KM+RMQ+ D +   +Y+ELFSY+CPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y++
Sbjct:  345 RTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYP--MRIDESIHLQLREKYGDKMLRMQKGDPQ---VYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTT 469          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_HUMAN (Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.937e-28
Identity = 62/130 (47.69%), Postives = 97/130 (74.62%), Query Frame = -3
Query:    3 KTKQYHQKSP-QYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK   Q++  +YE I K+NEQM+ALLAI L++ P    ++E+++ QLREKYG+KM+RMQ+ D +   +Y+ELFSY+CPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y++
Sbjct:  345 RTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYP--MRIDESIHLQLREKYGDKMLRMQKGDPQ---VYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTT 469          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_BOVIN (Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus GN=EIF3L PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.937e-28
Identity = 62/130 (47.69%), Postives = 97/130 (74.62%), Query Frame = -3
Query:    3 KTKQYHQKSP-QYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK   Q++  +YE I K+NEQM+ALLAI L++ P    ++E+++ QLREKYG+KM+RMQ+ D +   +Y+ELFSY+CPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y++
Sbjct:  345 RTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYP--MRIDESIHLQLREKYGDKMLRMQKGDPQ---VYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTT 469          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_DANRE (Eukaryotic translation initiation factor 3 subunit L OS=Danio rerio GN=eif3l PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.715e-28
Identity = 60/130 (46.15%), Postives = 97/130 (74.62%), Query Frame = -3
Query:    3 KTKQYHQKSP-QYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +T+   Q++  +YE I K+NEQM+ LLAI L++ P    ++E++++QLREKYG+KM+RMQ+ D     +++ELFS+ACPKF++P  P++E    NY+++ ++ QLK+F  EV+QQ  LS +RSFLK+Y++
Sbjct:  344 RTRNMFQRTTYKYEMINKQNEQMHGLLAIALTMYP--MRIDESIHTQLREKYGDKMLRMQKGD---LQVFEELFSFACPKFLSPVVPNYENVHPNYHKEPFQQQLKVFAEEVQQQAQLSTIRSFLKLYTT 468          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_PHANO (Eukaryotic translation initiation factor 3 subunit L OS=Phaeosphaeria nodorum GN=SNOG_08318 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 57/129 (44.19%), Postives = 89/129 (68.99%), Query Frame = -3
Query:    3 KTKQYHQKSPQYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TK + QK+ QY+ I KKN+QMYAL+AIC++  P    +++T+++ LREKYGE+  R+QR   +A  +++ELF  ACPKFI+P+ P F+ P VN   D     L++F+ EVK   +   V+S+LK+Y++
Sbjct:  270 RTKNF-QKNAQYDSITKKNDQMYALVAICVAFHP--TRLDDTIHTALREKYGEQFNRLQRGGPDALPLFEELFRTACPKFISPTPPDFDNPEVNI--DPVEHHLRIFMDEVKNNMMSPTVKSYLKLYTT 393          
The following BLAST results are available for this feature:
BLAST of CX309069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
EIF3L_NEMVE3.220e-3050.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_XENLA2.726e-2949.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_XENTR3.560e-2949.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_MOUSE1.767e-2848.46Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CHICK1.767e-2848.46Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_PANTR3.937e-2847.69Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_HUMAN3.937e-2847.69Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_BOVIN3.937e-2847.69Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DANRE6.715e-2846.15Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_PHANO3.119e-2544.19Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC21008B05Rv AbsLeaSub1 Citrus clementina cDNA clone C21008B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309069 ID=CX309069; Name=CX309069; organism=Citrus clementina; type=EST; length=394bp
AGTGATGAATACACTTTCAAGAAAGATCGGACTCCTGATAATAATTGTTG
CTGCTTCACCTCATAAAGGAAAAGCTTCAACTGGAGTCTATAGGCATCCT
GGTTGTAATTTACAAGAGGCTCCTCAAAGCTCGGAGCAGAGGGAGTAATG
AACTTAGGACATGCATACGAGAAGAGCTCATCATAGATAGAAAATGCTTC
ATCATCATATCTTTGCATCCGAATCATCTTCTCCCCATATTTCTCCCGTA
GTTGCGAGTTCACAGTCTCCTCAACATGCTTCACTTAGGGACAAAGAGAA
AGACAAATTGCCAGCAAGGCATACATCTGCTCATTCTTCTTTAGTATCTG
CTCATACTGTGGAGATTTCTGATGGTATTGCTTGGTCTTGTATA
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