CX309102

Overview
NameCX309102
Unique NameCX309102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15031 contig Ccv1_Contig15031:177..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309102 vs. ExPASy Swiss-Prot
Match: CLCF_ARATH (Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 3.205e-48
Identity = 104/181 (57.46%), Postives = 125/181 (69.06%), Query Frame = 2
Query:    2 LTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANRAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVEN-XXXXXXXXXXXXXXXKVSRAMSKEFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICT 541
            LTSVLLLFELT+DYRILLPLMGAVGLAIWVPSVAN+ KE+D+S+ R+  RGYSSLSP E K E +WR TD AD LEL+V+EN                KV R MSK +VKV+   TL+EA   +K+  QNC++VV+ +DFL GILT+GDI+R L       S   S   D NTC VSS+CT
Sbjct:  518 LTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQGKESDSSEGRSTGRGYSSLSPSERKTEGVWRHTDNADSLELTVIENPDHNSFLDEETILEDLKVMRVMSKNYVKVSSGTTLREARNILKESHQNCIMVVDDDDFLAGILTHGDIRRYL-------SNNASTILDENTCPVSSVCT 691          
BLAST of CX309102 vs. ExPASy Swiss-Prot
Match: CLCE_ARATH (Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 60/183 (32.79%), Postives = 98/183 (53.55%), Query Frame = 2
Query:    2 LTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANR---AKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENXXXXXXXXXXXXXXXKVSRAMSKEFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSICT 541
            LT+VLLLFELT+DYRI+LPL+GAVG++ W+ S  ++    +ET  + KR       SL+  +D++      T+   E+E S+  +                VS AM   F  V ++ +L+EA+  M   +Q+C L+V+ ++   GILT  DI+    + S    +G++   D+    V+ IC+
Sbjct:  467 LTAVLLLFELTQDYRIVLPLLGAVGMSSWITSGQSKRQETRETKETRKRKSQEAVQSLTSSDDESS-----TNNLCEVESSLCLDDSLNQSEELPKSIF--VSEAMRTRFATVMMSTSLEEALTRMLIEKQSCALIVDPDNIFLGILTLSDIQ----EFSKARKEGNNRPKDI---FVNDICS 635          
The following BLAST results are available for this feature:
BLAST of CX309102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CLCF_ARATH3.205e-4857.46Chloride channel protein CLC-f OS=Arabidopsis thal... [more]
CLCE_ARATH1.112e-1632.79Chloride channel protein CLC-e OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC21008E12Rv AbsLeaSub1 Citrus clementina cDNA clone C21008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309102 ID=CX309102; Name=CX309102; organism=Citrus clementina; type=EST; length=557bp
CTTGACATCAGTTCTACTTCTCTTTGAGCTGACTAGAGATTACAGGATAT
TGCTTCCTCTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCCTCTGTG
GCAAACCGGGCCAAGGAGACGGATGCATCTGATAAACGGACTTTGGCTAG
GGGTTATTCGTCGCTTTCACCTATGGAAGATAAAAATGAGGTTTTATGGA
GGAGGACTGATGGCGCAGATGAGTTAGAACTCTCTGTCGTAGAAAACGCT
GCTGACTCTGAAGCAGCTGAAGAAATGCTTTTGGAAGAATTGAAGGTTTC
TAGGGCTATGTCAAAGGAATTTGTAAAGGTTGCACTTACTGTAACCTTAA
AAGAAGCAATAGAATCCATGAAAGATGGCCAACAGAATTGTGTCCTTGTG
GTTAACGGTGAAGATTTCCTGGAGGGCATATTAACATATGGTGACATTAA
ACGTTGCTTGTCCAAACTGTCTAGTGATAATTCCAAGGGCGATTCAATAG
CTTCCGATGTGAATACATGTCTTGTTTCCTCTATTTGTACCTCGGCCACG
ACCACGC
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