CX309109

Overview
NameCX309109
Unique NameCX309109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length313
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT1_NICSY (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.712e-37
Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = -3
Query:   12 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 311
            +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF PLRDAIA +Q    +      YAP+F+ LPA+MMAVITMHKL+GLLMT  G
Sbjct:  168 LLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGG 267          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPO1B_TOBAC (DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.627e-37
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = -3
Query:   12 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 308
            L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF PLRDAIA +Q    +      YAP+F+ LPA+MMAVITMHKL+GLLMT  G
Sbjct:  169 LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGG 267          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT2_NICSY (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = -3
Query:   21 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 308
            LKRRQ+K+ETEAWEQAAKEY++LL DMCEQKLAPNLPYVKSLFLGWF PLRD IA++Q           YA YF  LPADMMAVITMHKL+GLLMT
Sbjct:  185 LKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMT 280          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPO2B_TOBAC (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.316e-35
Identity = 71/96 (73.96%), Postives = 78/96 (81.25%), Query Frame = -3
Query:   21 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 308
            LKRRQ+K+ETEAWEQAAKEY++LL DMCEQKLAPNLPYVKSLFLGWF PLRD IA++Q           YA Y   LPADMMAVITMHKL+GLLMT
Sbjct:  186 LKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMT 281          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT1_ARATH (DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.294e-33
Identity = 66/99 (66.67%), Postives = 82/99 (82.83%), Query Frame = -3
Query:   15 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA 311
            MLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPNLPY+KSLFLGWF P+R+AI  D  T + K   + YAP+   LPAD MAVITMHK++GLLMTNA
Sbjct:  134 MLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNA 232          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT2_ARATH (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.431e-32
Identity = 68/96 (70.83%), Postives = 76/96 (79.17%), Query Frame = -3
Query:   21 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 308
            L RRQ+KIETE WE+AA EY +LL DMCEQKLAPNLPYVKSLFLGWF PLRDAIAKDQ   +      TYA Y + LPAD ++VITMHKL+G LMT
Sbjct:  177 LWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMT 272          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT3_NICSY (DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = -3
Query:    3 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR 311
            ML+RRQIK ETEAWEQ  +EY++L  +MCE+KLAPNLPYVK L LGWF PLR AI K+Q  A+   KH   +AP+ ++LPAD MAVI MHKL+GLLM    E R
Sbjct:  142 MLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEER 244          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPO3B_TOBAC (DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = -3
Query:    3 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR 311
            ML+RRQIK ETEAWEQ  +EY++L  +MCE+KLAPNLPYVK L LGWF PLR AI K+Q  A+   KH   +AP+ ++LPAD MAVI MHKL+GLLM    E R
Sbjct:  141 MLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEER 243          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPO3A_TOBAC (DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = -3
Query:    3 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR 311
            ML+RRQIK ETEAWEQ  +EY++L  +MCE+KLAPNLPYVK L LGWF PLR AI K+Q  A+   KH   +AP+ ++LPAD MAVI MHKL+GLLM    E R
Sbjct:  142 MLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEER 244          
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT3_ARATH (DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.404e-27
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = -3
Query:   21 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 308
            L+RRQ+K ETEAWE+   EY+DL  +MCE+ LAPNLPYVK +FLGWF PL+D I ++Q   ++K K +   YAP+   LPAD MAVI MHK++GL+M+
Sbjct:  162 LRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259          
The following BLAST results are available for this feature:
BLAST of CX309109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RPOT1_NICSY2.712e-3772.00DNA-directed RNA polymerase 1, mitochondrial OS=Ni... [more]
RPO1B_TOBAC4.627e-3772.73DNA-directed RNA polymerase 1B, mitochondrial OS=N... [more]
RPOT2_NICSY6.681e-3675.00DNA-directed RNA polymerase 2, chloroplastic/mitoc... [more]
RPO2B_TOBAC3.316e-3573.96DNA-directed RNA polymerase 2B, chloroplastic/mito... [more]
RPOT1_ARATH5.294e-3366.67DNA-directed RNA polymerase 1, mitochondrial OS=Ar... [more]
RPOT2_ARATH3.431e-3270.83DNA-directed RNA polymerase 2, chloroplastic/mitoc... [more]
RPOT3_NICSY2.082e-2962.50DNA-directed RNA polymerase 3, chloroplastic OS=Ni... [more]
RPO3B_TOBAC2.082e-2962.50DNA-directed RNA polymerase 3B, chloroplastic OS=N... [more]
RPO3A_TOBAC2.082e-2962.50DNA-directed RNA polymerase 3A, chloroplastic OS=N... [more]
RPOT3_ARATH7.404e-2757.14DNA-directed RNA polymerase 3, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC21008F08Rv AbsLeaSub1 Citrus clementina cDNA clone C21008F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309109 ID=CX309109; Name=CX309109; organism=Citrus clementina; type=EST; length=313bp
ACCCTAACTTCTCCAGCATTTGTCATCAACAACCCCACCAACTTATGCAT
AGTAATAACCGCCATCATATCGGCCGGCAAATTATTGAAATACGGAGCAT
ATGTCATATGTTTCCACTTGTCCTGGGCAGTTGCCTGGTCTTTAGCAATT
GCGTCCCTTAGAGGCACAAACCAACCAAGAAACAAGGACTTAACATAAGG
CAAATTGGGTGCAAGCTTTTGCTCACACATGTCCGCTAAAAGATCTTGAT
ACTCCTTAGCTGCCTGTTCCCATGCTTCGGTCTCTATCTTGATTTGCCTA
CGCTTTAACATGT
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