CX309109
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT1_NICSY (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 2.712e-37 Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = -3 Query: 12 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 311 +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF PLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G Sbjct: 168 LLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGG 267
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPO1B_TOBAC (DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2) HSP 1 Score: 152.91 bits (385), Expect = 4.627e-37 Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = -3 Query: 12 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 308 L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF PLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G Sbjct: 169 LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGG 267
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT2_NICSY (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36 Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = -3 Query: 21 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 308 LKRRQ+K+ETEAWEQAAKEY++LL DMCEQKLAPNLPYVKSLFLGWF PLRD IA++Q YA YF LPADMMAVITMHKL+GLLMT Sbjct: 185 LKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMT 280
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPO2B_TOBAC (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 3.316e-35 Identity = 71/96 (73.96%), Postives = 78/96 (81.25%), Query Frame = -3 Query: 21 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 308 LKRRQ+K+ETEAWEQAAKEY++LL DMCEQKLAPNLPYVKSLFLGWF PLRD IA++Q YA Y LPADMMAVITMHKL+GLLMT Sbjct: 186 LKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMT 281
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT1_ARATH (DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 5.294e-33 Identity = 66/99 (66.67%), Postives = 82/99 (82.83%), Query Frame = -3 Query: 15 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA 311 MLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPNLPY+KSLFLGWF P+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLMTNA Sbjct: 134 MLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNA 232
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT2_ARATH (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.431e-32 Identity = 68/96 (70.83%), Postives = 76/96 (79.17%), Query Frame = -3 Query: 21 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 308 L RRQ+KIETE WE+AA EY +LL DMCEQKLAPNLPYVKSLFLGWF PLRDAIAKDQ + TYA Y + LPAD ++VITMHKL+G LMT Sbjct: 177 LWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMT 272
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT3_NICSY (DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29 Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = -3 Query: 3 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR 311 ML+RRQIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWF PLR AI K+Q A+ KH +AP+ ++LPAD MAVI MHKL+GLLM E R Sbjct: 142 MLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEER 244
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPO3B_TOBAC (DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29 Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = -3 Query: 3 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR 311 ML+RRQIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWF PLR AI K+Q A+ KH +AP+ ++LPAD MAVI MHKL+GLLM E R Sbjct: 141 MLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEER 243
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPO3A_TOBAC (DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29 Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = -3 Query: 3 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR 311 ML+RRQIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWF PLR AI K+Q A+ KH +AP+ ++LPAD MAVI MHKL+GLLM E R Sbjct: 142 MLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEER 244
BLAST of CX309109 vs. ExPASy Swiss-Prot
Match: RPOT3_ARATH (DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 7.404e-27 Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = -3 Query: 21 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFVPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 308 L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPYVK +FLGWF PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+ Sbjct: 162 LRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259 The following BLAST results are available for this feature:
BLAST of CX309109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX309109 ID=CX309109; Name=CX309109; organism=Citrus clementina; type=EST; length=313bpback to top |