CX309303

Overview
NameCX309303
Unique NameCX309303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX309303 vs. ExPASy Swiss-Prot
Match: CAP1_ARATH (Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.729e-24
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 2 
Query:   32 PAPDGTVQAVNQDPFAASLSIPPPSYVQMAEMEKKQVLLVHEQQVWQQYSREGMQGQASLAKI 220
            PAPDGTVQ VNQDPFAASL+IPPPSYVQMAEM+KKQ LL  EQQ+WQQY +EGM+GQASLAK+
Sbjct:  543 PAPDGTVQKVNQDPFAASLTIPPPSYVQMAEMDKKQYLLTQEQQLWQQYQQEGMRGQASLAKM 605
[Close]
BLAST of CX309303 vs. ExPASy Swiss-Prot
Match: CAP2_ARATH (Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.870e-24
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 2 
Query:   32 PAPDGTVQAVNQDPFAASLSIPPPSYVQMAEMEKKQVLLVHEQQVWQQYSREGMQGQASLAKI 220
            PAPDGTV+ VNQDPFAASL+IPPPSYVQMAEMEKKQ LL  EQQ+WQQY R+GM+GQASLAK+
Sbjct:  562 PAPDGTVEKVNQDPFAASLTIPPPSYVQMAEMEKKQYLLSQEQQLWQQYQRDGMRGQASLAKM 624
[Close]
BLAST of CX309303 vs. ExPASy Swiss-Prot
Match: CAP4_ARATH (Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:   59 VNQDPFAASLSIPPPSYVQMAEMEKKQVLLVHEQQVWQQYSREGMQGQASL 211
            V  DPFAASL + PP+YVQM +MEKKQ +L+ EQ +W QYSR+G QG  +L
Sbjct:  535 VPMDPFAASLEVAPPAYVQMNDMEKKQRMLMEEQMMWDQYSRDGRQGHMNL 585
[Close]
BLAST of CX309303 vs. ExPASy Swiss-Prot
Match: CAP3_ARATH (Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:   32 PAPDGTVQA-----VNQDPFAASLSIPPPSYVQMAEMEKKQVLLVHEQQVWQQYSREGMQGQASLAK 217
            PAP  T        V  DPFAASL + PP+YVQM +MEKKQ LL+ EQ +W QY+R G QG  +  +
Sbjct:  523 PAPPPTANGNRNSPVMVDPFAASLEVAPPAYVQMNDMEKKQRLLMEEQIMWDQYNRSGRQGHMNFGQ 589
The following BLAST results are available for this feature:
BLAST of CX309303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CAP1_ARATH3.729e-2482.54Probable clathrin assembly protein At4g32285 OS=Ar... [more]
CAP2_ARATH4.870e-2482.54Putative clathrin assembly protein At2g25430 OS=Ar... [more]
CAP4_ARATH1.244e-1160.78Putative clathrin assembly protein At1g03050 OS=Ar... [more]
CAP3_ARATH8.065e-1150.75Putative clathrin assembly protein At4g02650 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC20005B07SK OF2 Citrus clementina cDNA clone C20005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309303 ID=CX309303; Name=CX309303; organism=Citrus clementina; type=EST; length=596bp
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCTCCAGATGGGACAG
TCCAGGCAGTGAATCAGGACCCATTTGCAGCATCGTTGAGCATTCCACCT
CCTTCGTATGTGCAAATGGCTGAAATGGAGAAGAAACAGGTTTTGCTAGT
GCACGAACAGCAAGTATGGCAGCAATACTCTAGAGAAGGAATGCAAGGCC
AAGCTAGTTTGGCCAAGATCACTGGCACTGGATACTACAATGCAGGTCCT
ATGCCCATGATGCCATATGGAATGCCACCAGTCAATGGGATGGGACCACC
GGCAGGGTATCACTACACTCCCTACTGATTTTTCTCTTTGTTTATCTTTG
TATTTTGAGTTAATGATTTCTTTTATTATATGATATGACGTTTAACTTGC
AATTTGTGCATGATTCATGAAAATGGGGGTAAGAGAGAAGGGGAGTCTGC
TCATGAGATTAATGACTGGGGATTTTGATTCTGGGAGATTTGTAATCCAC
TTGTGATGTCTCTTGTGCTTTGTAATATTAGATTTATTTTTTTTTGTTTG
GGACTTCTCTACATTTATCTGATTATTGTTTTAAAAAAAAAAAAAA
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