CX309309

Overview
NameCX309309
Unique NameCX309309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: YQL5_SCHPO (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe GN=SPCC1827.05c PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 70/178 (39.33%), Postives = 111/178 (62.36%), Query Frame = 3
Query:  180 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYEC----PEIVGNVMPAPKRSSSMK 701
            +K++E K L  K  VLY+GR+PHGFYEK+M+ +FSQFG + RLR++RN+ TG SKH+ FIEF   +VA VVA+ MH YLL+  +LQ  +IP + VH  +++G +  +K +    + R    K  + E+  KL+ +  ++ + ++++++  GI  E     P+    V  A K+SS  K
Sbjct:   92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQHEKPLSKEKADKLITRHNRKLKLKKRKLKELGITLESDVSHPKAASPV--ASKKSSKKK 267          
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: MK67I_DANRE (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=mki67ip PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.793e-30
Identity = 69/166 (41.57%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  222 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGF-----NPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKRSSSMKV 704
            VLY+G +P G +E +++++F QFG + RLR++R+K TG SK +GF+EF   EVA++VA+ M+ YL+ E I++ H+IPPE VH KL+ G       P+Y  V R        NK  T ++ KK+  K+L ++ K RKR+ A GI+Y+ P     + PA K  S   V
Sbjct:   46 VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTR-------YNKTHTEDDVKKVGTKLLSKESKLRKRLAAKGIDYDFPGFAAQI-PAKKAPSEANV 203          
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: MK67I_XENTR (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=mki67ipl PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.814e-30
Identity = 60/143 (41.96%), Postives = 94/143 (65.73%), Query Frame = 3
Query:  222 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECP 650
            V+YIG IP   YE +++ +FSQFG + RLR++R+K TG SK + ++EF   EVA++VAD M+ YL  E +L+   +PPE VHP+L+ G   +++   +  V R   NK R+  E KK+ +++L ++ K RKR+   GI+Y+ P
Sbjct:   42 VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTMNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQRMLSKENKVRKRLAEKGIDYDFP 182          
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: MK67I_XENLA (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=mki67ipl PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 58/143 (40.56%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  222 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECP 650
            V+YIG IP    E ++Q +F+QFG + RLR++R+K TG SK + ++E+   EVA++VAD M+ YL  E +L+   + PE VHP+L+ G N R++   +  V R   N +R  EE KK+ ++++ ++ K RKR+   GI+Y+ P
Sbjct:   42 VIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQRMISKEYKLRKRLAEKGIDYDFP 182          
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: MK67I_BOVIN (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=MKI67IP PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.424e-27
Identity = 57/146 (39.04%), Postives = 95/146 (65.07%), Query Frame = 3
Query:  222 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIV 659
            V+Y+G +P   YE +++A+FSQFG + R R++R+K TG SK +GF+EF   +VA++ A+ M+ YL  E +L+ H IPPE VH +L+R ++  +K      V+R   N+ R+L +  ++ E+  K+++  RKR+   GI+Y  P +V
Sbjct:   46 VIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAVKR--YNQNRSLVQKLRMEERFKKKEKLLRKRLAKKGIDYNFPSLV 189          
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: MK67I_HUMAN (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo sapiens GN=MKI67IP PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 52/146 (35.62%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  222 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIV 659
            V+Y+  +P+   E ++ ++FSQFG + R R++R+K TG SK + F+EF   +VA++VA+ M+ YL  E +L+ H +PPE VH +L++ +N  +K      V+R   N+ RTL +  ++ E+  K+++  RK++   GI+Y+ P ++
Sbjct:   46 VVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKR--YNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPSLI 189          
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: NOP15_YEAST (Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae GN=NOP15 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 56/155 (36.13%), Postives = 97/155 (62.58%), Query Frame = 3
Query:  180 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYE 644
            +K  ++K L   + ++Y+ R+PHGF+EKE+  +F+QFG +K +R+ARNK TG S+H+GF+EF + E A +  ++M+ YLL  H+LQV ++P      KL       YK   RV VE+ +    + L+++ K      ++ ++R K++  +GIE++
Sbjct:   78 KKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKL-------YKYKKRVLVEKGITKPVKQLKDNMK------QKHEERIKKLAKSGIEFK 219          
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: MK67I_RAT (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus norvegicus GN=Mki67ip PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  180 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPKRSSS 695
            R+  ++K     + V+Y+G +P    E  +  + +QFG I+R R++R+K TG S+ F F+EF   +VA++VA+ M  YL  E +L    +P E VH  L+   N  + P     V+R   N++R   +  K+  +  K+++  RK++   GI+Y  P +   V+P PK+  S
Sbjct:   31 RRAKKKKEEKLNSGVVYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGFAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPREKVHKDLFNQCNVPFHPPSFPAVKR--YNQKRGHLQMLKMEYRFKKKEKLLRKKLAKKGIDYSFPSL---VLPKPKKEIS 197          
BLAST of CX309309 vs. ExPASy Swiss-Prot
Match: MK67I_MOUSE (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Mus musculus GN=Mki67ip PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 54/174 (31.03%), Postives = 95/174 (54.60%), Query Frame = 3
Query:  162 LEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEEHKKLVEKILKRDQKRRKRIEAAGIEYECPEIVGNVMPAPK 683
            ++G   +   ++K  +N+  V+Y+G +P    E  +  + +QFG I R R++R+K TG SK + F+EF   +VA++VA+ M  YL  E +L    +P + VH  L+   N  +       V+R   N++R   +  K+  +  K+++  RK++ A GI+Y  P +   V+P PK
Sbjct:   29 IQGRTKKPQQKKKEKLNRG-VVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALFHRPSFPAVKR--YNRKRGHLQMLKMEYRFKKKEKLLRKKLAAKGIDYSFPSL---VLPKPK 196          
The following BLAST results are available for this feature:
BLAST of CX309309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
YQL5_SCHPO7.280e-3239.33Uncharacterized RNA-binding protein C1827.05c OS=S... [more]
MK67I_DANRE1.793e-3041.57MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_XENTR6.814e-3041.96MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_XENLA2.863e-2840.56MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_BOVIN2.424e-2739.04MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_HUMAN6.600e-2535.62MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
NOP15_YEAST5.587e-2436.13Ribosome biogenesis protein 15 OS=Saccharomyces ce... [more]
MK67I_RAT4.895e-2031.98MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_MOUSE1.206e-1831.03MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
back to top
Properties
Property NameValue
Genbank descriptionC20008A05SK OF2 Citrus clementina cDNA clone C20008A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309309 ID=CX309309; Name=CX309309; organism=Citrus clementina; type=EST; length=741bp
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGGAAGCTACTGAGTAACA
AAAAGTGAGATGGGGGCCAAGCAAAAGAAAGCATTGAAGAAGAATTTGAA
GAAAGTTTCTTCACAGTTACCAGTTCCCAGTGATAAAAAAGGCGCCGCCG
ATTTCTTGCCGCTGGAAGGTGGGCCTGGGCGAAAACTTACTGAGGAGAAG
CCACTAGTAAATAAAGCTACGGTGTTATACATTGGCCGGATTCCACATGG
GTTCTATGAGAAGGAAATGCAAGCTTTCTTTAGCCAATTTGGTGCAATCA
AGAGGCTAAGAATCGCGCGGAATAAAATGACTGGACAGTCAAAGCATTTT
GGGTTCATCGAATTTAATGATCCTGAGGTAGCAGAAGTTGTAGCTGATGC
CATGCATGGTTATTTGTTGTTTGAGCACATTTTGCAAGTGCATCTTATTC
CTCCAGAACATGTTCATCCAAAACTATGGAGAGGCTTCAATCCTCGATAC
AAGCCAGTTGACCGGGTTCAAGTGGAACGTAAGCTACAAAACAAGGAAAG
AACTTTGGAAGAACACAAAAAATTGGTGGAGAAAATCTTGAAGCGTGATC
AGAAGCGGCGCAAGAGGATAGAGGCTGCTGGTATTGAGTATGAATGCCCT
GAAATTGTGGGTAATGTCATGCCTGCGCCGAAGAGATCAAGTTCAATGAA
GGTTGATTGCGCCCCACAGAAGTTCTGACTTAGAGTTCTGT
back to top