DY256803

Overview
NameDY256803
Unique NameDY256803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY256803 vs. ExPASy Swiss-Prot
Match: Y2992_ARATH (Uncharacterized protein At2g39920 OS=Arabidopsis thaliana GN=At2g39920 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 6.237e-39
Identity = 96/249 (38.55%), Postives = 141/249 (56.63%), Query Frame = 1 
Query:  175 MSAYAHQMXXXXXXXXXXXXXXXXHGSQYTVESGFYMTTFAAVIFXXXXXXXXXXXXXXXXXXAVMLQSCQNRSSGVVELTKSSGDNNYCKLFALHAELNSLEADN-LPEICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDRVNVHGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSKKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMD 918
            MSAY H M                 GS+Y++ESG YMT+ AA IF                  + MLQSC+NR+  +VE  +      YCK+ +LH++LNSL+ ++ LP +CR +A+  IK+G + R+LN +IQ+  +YF T+ P  +  DVV++DIDD        +NLL        Y++ IEEAKH K +  L L+ KL+ +G+ ++LLS++ E +RNAT E L S GY  WS LIM  ++  Q +
Sbjct:    1 MSAYTHPMERELSGLSSRGNSEL--GSRYSIESGCYMTSLAASIFIASLVTFGVLMITLLIALSTMLQSCENRNIAIVEAQRLDESFGYCKILSLHSQLNSLDEESELPLLCRDVALHRIKQGIYLRELNFTIQMALTYFQTIKPMNDNCDVVVIDIDD--------TNLLEQDSY---YMKYIEEAKHQKSILILALYSKLRSQGYSMVLLSRRPETERNATIEQLKSRGYSDWSHLIMSREDTRQKE 236
The following BLAST results are available for this feature:
BLAST of DY256803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2992_ARATH6.237e-3938.55Uncharacterized protein At2g39920 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2BB05ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256803 ID=DY256803; Name=DY256803; organism=Citrus clementina; type=EST; length=1280bp
TAACTTACTTTTCTGTAGGTTTAATAATGATCGGCAAAAGAAGCTGAGAT
GAGATGCTGTTGTTGGCTCGTAGCATGGTAGATGAATGTTATTGTGACCC
TTCTATCACCCAAAGGGATCTTTAGATATCCTAGCTTTTAACTTGAGCTG
GTGAATGCTGGTTAGATTACCAAAATGTCAGCTTACGCTCATCAAATGGA
GCGGCAGCTCTCCTCCCAGAGTCTCTCGAGTAGAGGAGGCTCTGAGCATG
GAAGCCAATATACGGTTGAGTCCGGGTTCTACATGACAACTTTTGCTGCA
GTAATCTTCATTGGTGGTCTTATAACAGTTGGAGTTCTGTTAATAACCTT
GCTGGTTACATTGGCTGTCATGTTGCAATCCTGTCAAAATAGGAGTTCAG
GAGTTGTTGAACTTACGAAATCAAGCGGTGATAACAATTATTGCAAGCTA
TTTGCTCTACATGCCGAGCTTAACAGCTTGGAAGCAGATAACTTGCCAGA
AATTTGCAGGGGTCTTGCTATTCGATACATCAAAGAAGGACAATTTGCTA
GAGATCTAAACCTTTCAATACAGATTGTTGAAAGCTACTTTAATACTCTT
ACACCATCATACAATGGTCTAGATGTAGTTTTAATGGACATAGATGATAT
TTTCGCTTCAAGTTCCAAGTACAGTAATCTATTAATAGACAGAGTTAATG
TACATGGGTATATTGAGTGCATTGAAGAGGCCAAACATCTGAAGCACATG
TTTACATTGAAACTATTCATGAAACTTCAAGTCAGGGGATGGCCTGTGAT
ACTTTTATCTAAAAAGCATGAGGGACAAAGAAATGCCACCACAGAGCTCC
TTATTTCAGCTGGTTACAGGGGTTGGTCTTCATTGATTATGAGGTTGGAC
AATGAAATGCAAATGGATGCCGCCAAATACTTGTCTAAACCAAGGGCGAA
ATTGCAAAAAAAAGGCTCCCCATACTTGGTTGGATTACCACCCAAAAGGA
AGCTTTAATAGGTCAAAATTTAAGGGAAGCCGGGTTTTTAAAAATTCTAA
ACCCTTTTTAATTAACTTTTTTAATCTCCAAAATTAAAAAAAAAAAAATT
TGGATTCCTAAACTAAAGTTTCTCCTGGGGGGGGCGGGGGCCCCAAAAGG
TTTCCTCCTCTTTTTGTTTTTTTTTAAAAAAAATTTTTTCCCAAAAAGGG
GGTTATTTGCGCCCCCCCCCCTGAAAAAAATTTCTCCCTTTTTTTTTCTG
GTTATTTTAGTAAACAATATTTTTTAATTA
back to top