DY256806

Overview
NameDY256806
Unique NameDY256806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14387 contig Ccv1_Contig14387:503..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256806 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:   50 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 277
            LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK CLE WL +LN  CPLCR+PL+P
Sbjct:   49 LSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
The following BLAST results are available for this feature:
BLAST of DY256806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHA2B_ARATH6.591e-1342.11RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2BC02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256806 ID=DY256806; Name=DY256806; organism=Citrus clementina; type=EST; length=528bp
ACCTCAAGTTGTCTCCGCATAGCCATATGATGTAAATTTAAGTCCTCCCC
TTAGCTATGTTGAGGAGTTCCGAAACCAGAACCCTGCAATCAAGTATGAA
ACATTGCTCCATTGTGAAGATGCAGAGCATGACTGTTCTGTGTGTTTGAC
CGAGTTTGAGCCTCAATCTGATATCAATAACTTGTCTTGTGGACATTTGT
TTCATAAAGTGTGCTTGGAGAAGTGGCTGGACTATTTGAATGTTACGTGC
CCGCTTTGCAGGACACCTCTAATTCCTGAGTTTGAAGACGATCCCTCTTG
CTTCTGGTGAGAGTGTTTTATGAGCTTGTCTAGTTGAGGAGACTTCTATG
TACAGCATGTAGTGTACAGGTATTTACTAATGCATCGGCCGGAGTGTAGT
GTTGTTTACACGCCTTCTATGTGTGAGTTAAATCTCGAGTCCTTTTGAAG
GCTTGTTGAGAAAACCAAAATTCTGTTGTAAATATTGTGAGGTTTCTGGT
TGTTTTATGGCATATAATCTGACTTTTT
back to top