DY256808

Overview
NameDY256808
Unique NameDY256808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9668 contig Ccv1_Contig9668:4..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_XENLA (RING finger protein 170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.654e-22
Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNR 597
            C VC      P + NC H FCG+CI+  W +G+ L A  CP+CR+ +TLL P   +  Q       +ILQ+   YNR F G      L  RI DLP LLR   RE+      L  + R R+ + ++ + +Y+ SP+DIIPE                   ++++ +YR V+  R
Sbjct:   87 CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGTWLGAINCPICRQTVTLLFPLFGATDQED---AQNILQEATGYNRRFSG--QPRSLMDRIMDLPTLLRHAFREMFSV-GGLFWMFRIRIVLCLLGALLYLVSPLDIIPEALFGILGFLDDLFVLFLLLIYISIMYREVVTQR 254          
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_XENTR (RING finger protein 170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 58/174 (33.33%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNR 597
            C VC      P + NC H FCG+CI+  W +GS L A  CP+CR+ +TL+ P   +  Q       +IL++   YNR F G      L  RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+DIIPE                   ++++ +YR V+  R
Sbjct:   87 CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGSWLGAINCPICRQTVTLIFPLFQATEQEDSQ---NILREAIGYNRRFSG--QPRSLMDRIMDLPTLLRHAFREMFSV-GGLFWMFRIRIVLCLLGALFYLVSPLDIIPEAVFGLLGFLDDFFVLFLLLIYISIMYREVVTQR 254          
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_MOUSE (RING finger protein 170 OS=Mus musculus GN=Rnf170 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20
Identity = 56/174 (32.18%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNR 597
            C +C    + P + NC H FCG+CI+  W +GS L A  CP+CR+ +TLL+       Q  D  V  + Q V  YNR F G      + +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PE                   ++++ +YR V+  R
Sbjct:  115 CPICLHQASFPVETNCGHLFCGSCIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VIRLRQDVNDYNRRFSG--QPRSIMERIMDLPTLLRHAFREVFSV-GGLFWMFRIRIMLCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 283          
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_DANRE (RING finger protein 170 OS=Danio rerio GN=rnf170 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.619e-20
Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = 1
Query:   76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIP----NDDSLRQRHDPAVGD-ILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNRHGG 606
            C VC     +P + NC H FCG+CI+  W +G+ L A  CP+CR+ +TLL P    ++ S      P     IL  +  YNR F G      L  R++D+P LLR   RE+      L  + R R+ + +  +  Y+ SP+D +PE                  F++++ +YR V+  R  G
Sbjct:   88 CPVCLQQAVLPVETNCGHLFCGSCIIAYWRYGTWLGAISCPICRQMVTLLFPLFQDSEQSAVAADSPVEPTLILTDISDYNRRFSG--QPRSLLDRLRDVPTLLRHAFREMFSV-GGLFWMFRVRILLCVCGALAYLVSPLDFLPEGVLGLLGFLDDFFVILLLFIYISIMYREVVTQRLAG 266          
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_HUMAN (RING finger protein 170 OS=Homo sapiens GN=RNF170 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.834e-20
Identity = 55/174 (31.61%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNR 597
            C +C    + P + NC H FCG CI+  W +GS L A  CP+CR+ +TLL+       Q  D  V  + Q +  YNR F G      + +RI DLP LLR   RE+      L  + R R+ + ++ +  Y+ SP+D +PE                   ++++ +YR V+  R
Sbjct:   87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VLRLHQDINDYNRRFSG--QPRSIMERIMDLPTLLRHAFREMFSV-GGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 255          
The following BLAST results are available for this feature:
BLAST of DY256808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RN170_XENLA3.654e-2233.91RING finger protein 170 OS=Xenopus laevis GN=rnf17... [more]
RN170_XENTR8.141e-2233.33RING finger protein 170 OS=Xenopus tropicalis GN=r... [more]
RN170_MOUSE2.005e-2032.18RING finger protein 170 OS=Mus musculus GN=Rnf170 ... [more]
RN170_DANRE2.619e-2031.32RING finger protein 170 OS=Danio rerio GN=rnf170 P... [more]
RN170_HUMAN5.834e-2031.61RING finger protein 170 OS=Homo sapiens GN=RNF170 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2BC07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256808 ID=DY256808; Name=DY256808; organism=Citrus clementina; type=EST; length=820bp
GGATCAATCGTTTAGAGAAAGACGGAGTGGACCAGAGAAAGAGGAGGAAT
GGAAGGGCCTCCATGCGGCGATGTCTGCTCCGTGTGCCATGGAAACTTCA
ACGTTCCTTGCCAAGCAAATTGCTCTCACTGGTTTTGCGGTAACTGTATT
ATGCTGGTATGGGATCATGGATCAACACTTCAAGCATGTAGATGCCCTCT
GTGTCGTCGTCGGATTACTTTGTTGATTCCCAATGATGATTCATTAAGAC
AACGCCATGATCCTGCCGTTGGTGATATTCTTCAAAAGGTTGAATCCTAC
AATCGTATTTTTGGTGGGCCCACAACTGCTAATGGTCTCTTCCAGAGAAT
TCAAGACCTTCCTTTTCTACTGCGGAGATTGGTGCGGGAACTGGTGGATC
CTCACAGATCGCTTCCTCTTGTCATCAGAGCCCGTGTTTACATTGCAATG
ATATTCAGTGCTGTCTACATATTCAGCCCTATAGACATTATTCCAGAAGC
GCTTTTGGGAATAGTTGGCTTATTGGATGATCTCCTAATTGCGCTCTTGT
GCTTTCTCCATGTTGCTGCCCTCTATCGAGCTGTCCTGTATAATCGTCAT
GGCGGGGCATGAATACCGTCCTGGAAGCACAAGATGCAGTTCGTTTGTTC
CTTTGGGAAAGCTAAGTTTTGAGAGTTTTGGAAAGGATTTAGACACCCCC
CACCCCCTTCCCCGATGGGTCAAGTACATATTCCCAGATTTGTTCTGTAC
GTCCCTTCACTGTAAGTTGTAACGAATATTGCACTATTAACATCATTAAT
CAATTTGGGTTTGATTACAC
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