DY256808
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_XENLA (RING finger protein 170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.654e-22 Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 1 Query: 76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNR 597 C VC P + NC H FCG+CI+ W +G+ L A CP+CR+ +TLL P + Q +ILQ+ YNR F G L RI DLP LLR RE+ L + R R+ + ++ + +Y+ SP+DIIPE ++++ +YR V+ R Sbjct: 87 CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGTWLGAINCPICRQTVTLLFPLFGATDQED---AQNILQEATGYNRRFSG--QPRSLMDRIMDLPTLLRHAFREMFSV-GGLFWMFRIRIVLCLLGALLYLVSPLDIIPEALFGILGFLDDLFVLFLLLIYISIMYREVVTQR 254
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_XENTR (RING finger protein 170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22 Identity = 58/174 (33.33%), Postives = 85/174 (48.85%), Query Frame = 1 Query: 76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNR 597 C VC P + NC H FCG+CI+ W +GS L A CP+CR+ +TL+ P + Q +IL++ YNR F G L RI DLP LLR RE+ L + R R+ + ++ + Y+ SP+DIIPE ++++ +YR V+ R Sbjct: 87 CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGSWLGAINCPICRQTVTLIFPLFQATEQEDSQ---NILREAIGYNRRFSG--QPRSLMDRIMDLPTLLRHAFREMFSV-GGLFWMFRIRIVLCLLGALFYLVSPLDIIPEAVFGLLGFLDDFFVLFLLLIYISIMYREVVTQR 254
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_MOUSE (RING finger protein 170 OS=Mus musculus GN=Rnf170 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20 Identity = 56/174 (32.18%), Postives = 85/174 (48.85%), Query Frame = 1 Query: 76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNR 597 C +C + P + NC H FCG+CI+ W +GS L A CP+CR+ +TLL+ Q D V + Q V YNR F G + +RI DLP LLR RE+ L + R R+ + ++ + Y+ SP+D +PE ++++ +YR V+ R Sbjct: 115 CPICLHQASFPVETNCGHLFCGSCIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VIRLRQDVNDYNRRFSG--QPRSIMERIMDLPTLLRHAFREVFSV-GGLFWMFRIRIMLCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 283
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_DANRE (RING finger protein 170 OS=Danio rerio GN=rnf170 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.619e-20 Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = 1 Query: 76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIP----NDDSLRQRHDPAVGD-ILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNRHGG 606 C VC +P + NC H FCG+CI+ W +G+ L A CP+CR+ +TLL P ++ S P IL + YNR F G L R++D+P LLR RE+ L + R R+ + + + Y+ SP+D +PE F++++ +YR V+ R G Sbjct: 88 CPVCLQQAVLPVETNCGHLFCGSCIIAYWRYGTWLGAISCPICRQMVTLLFPLFQDSEQSAVAADSPVEPTLILTDISDYNRRFSG--QPRSLLDRLRDVPTLLRHAFREMFSV-GGLFWMFRVRILLCVCGALAYLVSPLDFLPEGVLGLLGFLDDFFVILLLFIYISIMYREVVTQRLAG 266
BLAST of DY256808 vs. ExPASy Swiss-Prot
Match: RN170_HUMAN (RING finger protein 170 OS=Homo sapiens GN=RNF170 PE=2 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 5.834e-20 Identity = 55/174 (31.61%), Postives = 84/174 (48.28%), Query Frame = 1 Query: 76 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEXXXXXXXXXXXXXXXXXCFLHVAALYRAVLYNR 597 C +C + P + NC H FCG CI+ W +GS L A CP+CR+ +TLL+ Q D V + Q + YNR F G + +RI DLP LLR RE+ L + R R+ + ++ + Y+ SP+D +PE ++++ +YR V+ R Sbjct: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VLRLHQDINDYNRRFSG--QPRSIMERIMDLPTLLRHAFREMFSV-GGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 255 The following BLAST results are available for this feature:
BLAST of DY256808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY256808 ID=DY256808; Name=DY256808; organism=Citrus clementina; type=EST; length=820bpback to top |