DY256809

Overview
NameDY256809
Unique NameDY256809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9568 contig Ccv1_Contig9568:743..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256809 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.048e-54
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 2 
Query:    2 KNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV 307
            KNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV
Sbjct:  228 KNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV 329
[Close]
BLAST of DY256809 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.513e-53
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 2 
Query:    2 KNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV 307
            KNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF GDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV
Sbjct:  228 KNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTHVKV 329
[Close]
BLAST of DY256809 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.789e-15
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 2 
Query:    8 SSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASS 280
            +++AHFVA DYGHMD+LDD+      + ++   CKNG   +  MR  V GIVVAFLK   +G+  + R I+KDPS +P KLD    ++ +S
Sbjct:  231 ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKLDPSPELEEAS 320
The following BLAST results are available for this feature:
BLAST of DY256809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CLH1_CITSI1.048e-54100.00Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_CITUN1.513e-5399.02Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_ARATH2.789e-1545.05Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2BC08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256809 ID=DY256809; Name=DY256809; organism=Citrus clementina; type=EST; length=500bp
CAAGAACTCTTCTCGTGCTCATTTTGTTGCTACAGATTATGGTCACATGG
ACATTTTGGATGATAATCCATCAGACGTAAAGTCTTGGGCGCTTTCGAAA
TACTTTTGCAAAAATGGAAACGAATCGAGGGATCCAATGAGAAGATGTGT
GAGTGGGATTGTGGTGGCGTTTCTGAAGGATTTTTTTTATGGTGATGCTG
AGGATTTTAGGCAAATCCTGAAAGACCCTTCTTTTGCTCCTATAAAGCTT
GATTCTGTTGAGTACATTGATGCATCAAGCATGCTTACGACAACTCATGT
AAAAGTTTAACGATCTTAAAATTAATTAAATGTACTTTAATTTTTTTGCT
CCTTTTTTTTTTTCCTAATTTTAAGAATAAAACAGCCAATTTCATTTATA
CTAGAATCACTAGTTATATATATGCAGGTGATGTTGTTCTCTGTTTGTAA
CGGAATCCTCTTTGTTACATTACTAATAAATTAGTCGCAGTTATGAGATT
back to top