DY256811

Overview
NameDY256811
Unique NameDY256811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9670 contig Ccv1_Contig9670:4..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256811 vs. ExPASy Swiss-Prot
Match: Y1689_ARATH (Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.517e-64
Identity = 126/162 (77.78%), Postives = 139/162 (85.80%), Query Frame = 3
Query:    3 ALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVVKEGETDPLINAEKGT------GDGIAK---APAWNSNKD 461
            A+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E+QQKASETS+QLPQ +KE E DPLI AE G+      G G+ +   AP WNSNKD
Sbjct:  194 AITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIETQQKASETSTQLPQ-MKESEKDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKD 354          
BLAST of DY256811 vs. ExPASy Swiss-Prot
Match: S35E3_DANRE (Solute carrier family 35 member E3 OS=Danio rerio GN=slc35e3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.556e-14
Identity = 43/117 (36.75%), Postives = 66/117 (56.41%), Query Frame = 3
Query:   12 LFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLP 362
            L ++ PF + L  +  +F   ++   LF ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GYVL  DP S    LGIL  + G++ Y++   L  Q++     +Q P
Sbjct:  199 LLVLVPFFEPLTGDGGIFG-PWSFLALFMVLLSGVIAFLVNLSIYWIIGNTSPVTYNMFGHFKFCITLLGGYVLFQDPLSLNQGLGILCTLTGILAYTH-FKLAEQEEGKSRLTQRP 313          
BLAST of DY256811 vs. ExPASy Swiss-Prot
Match: S35E3_HUMAN (Solute carrier family 35 member E3 OS=Homo sapiens GN=SLC35E3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 3
Query:   12 LFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLP 362
            L +  PF + +     +F   ++   L  ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GYVL  DP S    LGIL  + G++ Y++   L  Q+ +    +Q P
Sbjct:  199 LLVAVPFFEPVFGEGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLFKDPLSINQALGILCTLFGILAYTH-FKLSEQEGSRSKLAQRP 313          
BLAST of DY256811 vs. ExPASy Swiss-Prot
Match: S35E3_MOUSE (Solute carrier family 35 member E3 OS=Mus musculus GN=Slc35e3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   12 LFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLP 362
            L +  PF + +     +F   ++   L  ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GY+L  DP S    LGIL  + G++ Y++   L  Q+ +     Q P
Sbjct:  199 LLVAVPFFEPVFAEGGIFG-PWSVSALLMVLLSGIIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLCGGYILFKDPLSVNQGLGILCTLFGILTYTH-FKLSEQEGSKSKLVQRP 313          
BLAST of DY256811 vs. ExPASy Swiss-Prot
Match: S35E3_BOVIN (Solute carrier family 35 member E3 OS=Bos taurus GN=SLC35E3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.392e-12
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   12 LFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLP 362
            L +  PF + +     +F   ++   L  ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GYVL  DP S    LG+L  + G++ Y++   L  Q+ +     Q P
Sbjct:  199 LLVAVPFFEPVFAEGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLFKDPLSINQGLGMLCTLFGILAYTH-FKLSEQEGSKSKLVQRP 313          
The following BLAST results are available for this feature:
BLAST of DY256811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1689_ARATH3.517e-6477.78Uncharacterized membrane protein At1g06890 OS=Arab... [more]
S35E3_DANRE2.556e-1436.75Solute carrier family 35 member E3 OS=Danio rerio ... [more]
S35E3_HUMAN4.820e-1335.04Solute carrier family 35 member E3 OS=Homo sapiens... [more]
S35E3_MOUSE6.295e-1334.19Solute carrier family 35 member E3 OS=Mus musculus... [more]
S35E3_BOVIN2.392e-1234.19Solute carrier family 35 member E3 OS=Bos taurus G... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2BD02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256811 ID=DY256811; Name=DY256811; organism=Citrus clementina; type=EST; length=780bp
AGGCTTTAACTTTGTTCATCATTGGCCCATTTCTAGATGGGCTTTTGACA
AACAAAAATGTTTTTGCATTCAAATACACCCCTTACGTGCTGTTCTTCAT
TGTACTATCGTGCTTGATATCTGTTTCTGTAAACTTCAGCACGTTTTTGG
TAATTGGAAAGACATCTCCAGTCACATATCAGGTCCTAGGACATCTGAAA
ACATGCTTGGTTCTAGCATTTGGCTATGTTCTTCTTCATGATCCATTCAG
CTGGCGCAACATTTTGGGTATCCTGATTGCCGTAATTGGGATGGTACTTT
ATTCGTATTGTTGCAGTCTTGAGAGCCAGCAGAAGGCTAGTGAAACATCA
TCTCAACTGCCCCAGGTAGTGAAGGAAGGTGAAACTGATCCTTTAATCAA
TGCAGAAAAAGGAACCGGCGATGGCATTGCCAAAGCTCCAGCGTGGAATT
CAAACAAGGACCTACATGCTTGAAACTTGTCAATCATTATTCATTCACTT
TTGATAAAATTCTGTAATCTGTTCCAGTGATGAAGATGTTGCTGGTAAGA
GTCACCATGTACGTTGATAGCAGTAGATTGGGTGTTTGGAGATTTCAACG
CCAATCATATAGTAGGTCCCAGAGACATAACGAGATGCCATTTTATATAG
CAGTTTTGGATTATGAGTTTTGAACGAATCANGCATGAAATAGGATAATA
TACCAGAAGCTGATTTGTTAAGTGTATACTGTGTCACTATATACTGAAAG
AAAAGTTTCATAATTGTTATTTCAGTTTAG
back to top