DY256813

Overview
NameDY256813
Unique NameDY256813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256813_ssr276 microsatellite DY256813_ssr276:276..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig996 contig Ccv1_Contig996:1..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_METAC (Chaperone protein dnaJ OS=Methanosarcina acetivorans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.378e-16
Identity = 64/164 (39.02%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED----EDFYGFMQEMVSMMNNVKDEG--------DSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTS--RC 746
            YY ILG+ KDAS  DI+  Y KLA+++HPDR+ K+PG    A+ +F++I EAY+VLSD  KR+ YD    AG+ +    ED     DF GF           +  G        D   DL  TF E   G+  D +   T+    R +T  G  AK GTS  RC
Sbjct:    7 YYEILGLPKDASVEDIKKTYRKLALQYHPDRN-KDPG----AEDKFKEISEAYAVLSDTEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYITFEEAAFGVRKDIDIPRTE----RCSTCSGTGAKPGTSPKRC 161          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_METMA (Chaperone protein dnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.094e-15
Identity = 63/164 (38.41%), Postives = 83/164 (50.61%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED----EDFYGFMQEMVSMMNNVKDEG--------DSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTS--RC 746
            YY ILG+ KD+S  DI+  Y KLA+++HPDR+ K PG    A+ +F++I EAY+VLSD  KR+ YD    AG+ +    ED     DF GF           +  G        D   DL  TF E   G+  D +   T+    R +T  G  AK GTS  RC
Sbjct:    7 YYEILGLSKDSSVEDIKKTYRKLALQYHPDRN-KEPG----AEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYVTFEEAAFGVRKDIDIPRTE----RCSTCSGTGAKPGTSPKRC 161          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.430e-15
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSF 659
            YY +L + ++ASF +I+ AY KLA+K+HPDR+  NP    EA+ +F+ I EAY VLSDE KR++YD   Y     E++ F GF Q+             SF+D+   F E V G +F
Sbjct:    6 YYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNP----EAEEKFKLINEAYQVLSDEEKRALYDQ--YGKAGLENQGFSGFNQK-------------SFDDIM-DFFESVFGETF 102          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_THET2 (Chaperone protein dnaJ OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.092e-15
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-FMQEM 569
            YYAILG+ ++AS  +I+ AY +LA+K+HPDR   NPG   EA+ RF++I EAY+VLSD  KR+ YD G  +  E   ED +  F QE+
Sbjct:    4 YYAILGVSREASQEEIKKAYRRLALKYHPDR---NPG-DKEAEERFKEINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDLFFQEV 87          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ1_THET8 (Chaperone protein dnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.092e-15
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-FMQEM 569
            YYAILG+ ++AS  +I+ AY +LA+K+HPDR   NPG   EA+ RF++I EAY+VLSD  KR+ YD G  +  E   ED +  F QE+
Sbjct:    4 YYAILGVSREASQEEIKKAYRRLALKYHPDR---NPG-DKEAEERFKEINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDLFFQEV 87          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.210e-14
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +LG++++AS  DI+ AY KLA+KWHPD   KNP    EA+RRF+++ EAY VLSD  KR +YD
Sbjct:    4 YYDVLGVQRNASPEDIKKAYRKLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB6_BOVIN (DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.210e-14
Identity = 52/126 (41.27%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSF---EDLQRTFVEMVDGMSFDFNYDP 677
            YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+R+F+Q+ EAY VLSD  KR +YD    + L               S  ++  + G +F   ED+ R F    D  SFDF  DP
Sbjct:    4 YYEVLGVQRHASAEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDRYGKEGLNGGGGG--------GSHFDSPFEFGFTFRNPEDVFREFFGGRDPFSFDFFEDP 118          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJ6A_XENLA (DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.210e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +LG++++AS  DI+ AY +LA+KWHPD   KNP    EA+RRF+++ EAY VLSD  KR +YD
Sbjct:    4 YYEVLGVQRNASADDIKKAYRRLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB6_RAT (DnaJ homolog subfamily B member 6 OS=Rattus norvegicus GN=Dnajb6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.580e-14
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSF---EDLQRTFVEMVDGMSFDFNYDPTD 683
            YY +LG+++ AS  DI+ AY K A+KWHPD   KNP    EA+R+F+Q+ EAY VLSD  KR +YD       +   E   G      S  ++  + G +F   +D+ R F    D  SFDF  DP D
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD-------KYGKEGLNGGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFD 121          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.064e-14
Identity = 55/147 (37.41%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSF---EDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTS 740
            YY +LG++K AS  DI+ AY KLA+KWHPD   KNP    EA+++F+Q+ EAY VLSD  KR +YD    + L               S  +N  + G +F   +D+ R F    D  SFDF  DP +         +G  ++ G S
Sbjct:    4 YYEVLGVQKHASAEDIKKAYRKLALKWHPD---KNPENKEEAEQQFKQVAEAYEVLSDAKKRDIYDRFGKEGLINGGGG--------GSHHDNPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFEDFFGGRRGPRGSRSRAGGS 139          
The following BLAST results are available for this feature:
BLAST of DY256813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
DNAJ_METAC8.378e-1639.02Chaperone protein dnaJ OS=Methanosarcina acetivora... [more]
DNAJ_METMA1.094e-1538.41Chaperone protein dnaJ OS=Methanosarcina mazei GN=... [more]
DNAJ_NITSB5.430e-1541.88Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_THET27.092e-1550.00Chaperone protein dnaJ OS=Thermus thermophilus (st... [more]
DNAJ1_THET87.092e-1550.00Chaperone protein dnaJ 1 OS=Thermus thermophilus (... [more]
DNJB6_XENTR1.210e-1456.06DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]
DNJB6_BOVIN1.210e-1441.27DnaJ homolog subfamily B member 6 OS=Bos taurus GN... [more]
DNJ6A_XENLA1.210e-1454.55DnaJ homolog subfamily B member 6-A OS=Xenopus lae... [more]
DNJB6_RAT1.580e-1440.63DnaJ homolog subfamily B member 6 OS=Rattus norveg... [more]
DNJB6_CHICK2.064e-1437.41DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2BD04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256813 ID=DY256813; Name=DY256813; organism=Citrus clementina; type=EST; length=953bp
GCGGGGGTCTCTCTTCCCTTCATCACCCGTACAGTCGTCAATAATCCCCT
TTTAAGTCTCTAAACGCAACACATACCCAGGAGGTGAGAAGGATTAAAAA
AAAAAAAACAATTAAAAAAAAGGAGAAACCAAAAAATTCCTTTATTTTTC
TCTGCTTTATCAATCCTCCAAATGCTCTCTTCATAACAGTTTGTTTCCGT
TTCTTCATATGATTTTATCTTGACAAGCATATTACATCCTTATTGCTGTT
TTCTTTTTTGGTTGCTGTGATGGATGGAGGAGGAGGATCCAACGGCGGAT
CTTTGAGCTACTACGCGATTCTTGGGATTCGCAAGGACGCCTCCTTCTCT
GACATTCGCTCCGCTTATCACAAGCTCGCCATGAAATGGCATCCGGATAG
GAGTGCGAAGAACCCGGGAGTGGCCGGGGAAGCCAAACGCCGGTTTCAGC
AAATTCAAGAAGCTTACTCCGTCCTCTCGGATGAGAACAAGAGGTCAATG
TACGATGCTGGACTTTATGATCCCCTTGAGGAAGAAGATGAGGACTTCTA
TGGTTTTATGCAAGAGATGGTCTCCATGATGAATAATGTTAAAGACGAGG
GGGACAGTTTTGAGGACCTCCAAAGGACGTTCGTGGAAATGGTGGATGGG
ATGAGCTTCGACTTTAATTATGATCCTACGGATGCGCAAAAAGCACGTGT
CAACACATCAAAGGGTAAAGCGGCCAAGCGCGGTACTTCTCGTTGCTGAC
AATCGCTCTGGATCATCTCTGATCATTTCAGCTAATGATGATGTTGTTTA
TCAATTCCCCCCATTTTGTTCTAAATCTCAAATTAATCCCCATGTTGGGG
GTTGGTAGTTTTAAGAAATTTTTTTTTTTTTTTAATCCCCCGGGGGGGTA
GCATTTTGGACCTGAAAACTTTCCTTAAAAAATAAAATCCCTTTTTAAGG
TAA
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