DY256814

Overview
NameDY256814
Unique NameDY256814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1095
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9671 contig Ccv1_Contig9671:2..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_ARATH (10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.633e-29
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 2
Query:   74 MAKRLIPTLNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE 319
            M KRLIPT NR+LV++++ P+KT +GILLPEKSSKLNSGKVIAVGPG+RDK+G  IPV+ KEGDTVLLP YGG  VKLGE E
Sbjct:    1 MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGENE 82          
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_BRANA (10 kDa chaperonin OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.196e-29
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 2
Query:   74 MAKRLIPTLNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE 319
            M KRLIPT NR+LV+ ++ P+KT +GILLPEK+SKLNSGKVIAVGPG+RDK+G  IPV+ KEGDTVLLP YGG  VKLGEKE
Sbjct:    1 MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGEKE 82          
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_SCHPO (10 kDa heat shock protein, mitochondrial OS=Schizosaccharomyces pombe GN=hsp10 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.686e-15
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 2
Query:   77 AKRLIPTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE 319
            AK ++P L+R+LV++I   +KT +GI LPEKS  KL+ G+VI+VG G  +KEG     +   GD VLLP YGG ++K+GE+E
Sbjct:    8 AKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSVAVGDRVLLPAYGGSNIKVGEEE 89          
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_YEAST (10 kDa heat shock protein, mitochondrial OS=Saccharomyces cerevisiae GN=HSP10 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.935e-14
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   77 AKRLIPTLNRVLVEKIVPPSKTNAGILLPEKS-SKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE*VFL 331
            AK ++P ++RVLV++I   +KT +G+ LPEK+  KLN  +V+AVGPG  D  GN +    K GD VL+P +GG  +KLG  + V L
Sbjct:    8 AKSIVPLMDRVLVQRIKAQAKTASGLYLPEKNVEKLNQAEVVAVGPGFTDANGNKVVPQVKVGDQVLIPQFGGSTIKLGNDDEVIL 93          
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_ORYLA (10 kDa heat shock protein, mitochondrial OS=Oryzias latipes GN=hspe1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.270e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   80 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE 319
            ++ +P  +RVLVE+++  + T  GI+LPEKS  K+    V+AVGPG+ +++G   P++ K G+ VLLP YGG  V L +K+
Sbjct:    4 RKFLPLFDRVLVERLMAETVTKGGIMLPEKSQGKVLQATVVAVGPGSMNQKGEVQPMSVKVGEKVLLPQYGGTKVVLEDKD 84          
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_MOUSE (10 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspe1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.174e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 2
Query:   80 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE 319
            ++ +P  +RVLVE+    + T  GI+LPEKS  K+    V+AVG G + K G   PV+ K GD VLLP YGG  V L +K+
Sbjct:    7 RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSVKVGDKVLLPEYGGTKVVLDDKD 87          
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_HUMAN (10 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPE1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.533e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   80 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE 319
            ++ +P  +RVLVE+    + T  GI+LPEKS  K+    V+AVG G++ K G   PV+ K GD VLLP YGG  V L +K+
Sbjct:    7 RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKD 87          
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_BOVIN (10 kDa heat shock protein, mitochondrial OS=Bos taurus GN=HSPE1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.533e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   80 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE 319
            ++ +P  +RVLVE+    + T  GI+LPEKS  K+    V+AVG G++ K G   PV+ K GD VLLP YGG  V L +K+
Sbjct:    7 RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKD 87          
BLAST of DY256814 vs. ExPASy Swiss-Prot
Match: CH10_RAT (10 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspe1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.003e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 2
Query:   80 KRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKE 319
            ++ +P  +RVLVE+    + T  GI+LPEKS  K+    V+AVG G + K G   PV+ K GD VLLP YGG  V L +K+
Sbjct:    7 RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKD 87          
The following BLAST results are available for this feature:
BLAST of DY256814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CH10_ARATH3.633e-2974.3910 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10... [more]
CH10_BRANA6.196e-2974.3910 kDa chaperonin OS=Brassica napus PE=3 SV=1[more]
CH10_SCHPO8.686e-1550.0010 kDa heat shock protein, mitochondrial OS=Schizo... [more]
CH10_YEAST1.935e-1446.5110 kDa heat shock protein, mitochondrial OS=Saccha... [more]
CH10_ORYLA5.270e-1243.2110 kDa heat shock protein, mitochondrial OS=Oryzia... [more]
CH10_MOUSE1.174e-1145.6810 kDa heat shock protein, mitochondrial OS=Mus mu... [more]
CH10_HUMAN1.533e-1145.6810 kDa heat shock protein, mitochondrial OS=Homo s... [more]
CH10_BOVIN1.533e-1145.6810 kDa heat shock protein, mitochondrial OS=Bos ta... [more]
CH10_RAT2.003e-1145.6810 kDa heat shock protein, mitochondrial OS=Rattus... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2BD08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256814 ID=DY256814; Name=DY256814; organism=Citrus clementina; type=EST; length=1095bp
CGGGGTCTCACCCGTCATTCTTCATTGGCAACACTGTCCCAAAGGCCCTA
ATTTTTGCAGAGAAAGCAAAGCGATGGCGAAGCGATTGATCCCAACTTTG
AACCGTGTTCTCGTCGAGAAAATCGTACCTCCTTCCAAAACCAATGCCGG
GATTCTCCTCCCTGAAAAGTCCAGCAAGCTGAACTCTGGGAAAGTGATTG
CTGTGGGCCCGGGTGCGCGTGACAAGGAGGGGAATACCATTCCGGTGGCC
TTCAAGGAAGGTGACACCGTTCTTCTACCGAATTATGGTGGCGATCATGT
CAAGCTCGGTGAGAAAGAGTAAGTATTTTTGTCTCTTAAGCCTTGATAAT
ATCCTGAAATCAATTTAGGATCATAAAATATCTAAAAAGACAAATTTTTA
AAAAGTAATTTAAGTATCTTATGAATAATTCATTATGTCATCAATTATAT
TTAGACTAATAATGTATTAGTATACATGTACATTCTCTACTATGAGATCA
TTATGATATTAGTAAATATGTATTATAGTTATATTGACTTAGAGAATATC
CTTGAAAGTCGTGATTCATCTTATTGGTTGTTTCATGGTTTTACATATGG
GAGAATGTATTGGATAATATGGATTGGTGTCCTTTATAAAATAAATGATA
ATTACTCTCATAATTGATGTTGGCGGGTAATTGATCATGAGCCTATGTAG
GGGATTTAGTAGAAGTATATTCTTTGCTTGTCAATGTGAATGTTATTGTT
ATCGCTATTGATATAAGCCAATAGTTGAAGTACGAAATATATTGATTCAA
GGTCCTTTTGTGTTATGCAAACCTTTGGCTAGTGAAAGTAAGTTAAGCTT
TGTGTTTATCTGTTTATTGGCTTTGGAATGTGGTGGTTGAATACTTTTTT
TTGTTGGTATTGTTTTGGGCAGCTACCCATTTGTAATAGGACCAAGAAAA
TTTTGGGGACTTCTGCATGAATAATACATTTGACCTGAAAGGGGTATTGG
TGGAATTATGGGTTGGTTTTAAAACAAATGGAACAAACAAATTTGGTTGA
AGGAATTTAATTTAATGTTGTTTTTAAATTTTTTGGTTTTTTTGG
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