DY256904

Overview
NameDY256904
Unique NameDY256904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1036
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9743 contig Ccv1_Contig9743:10..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: VP201_ARATH (Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 5.100e-78
Identity = 159/225 (70.67%), Postives = 179/225 (79.56%), Query Frame = 1
Query:  163 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 837
            MGNLFVKKP+IT+VDRAILSLKTQRRKL QYQQ+L+ VIEAEK AARDLI                        VD W+INVEQQL DIEL SKQKAVFESLK G +AIKAIQSE++L+DVQKLMDDT +AKAYQDE+NAILGEKLSAEDEE+ILAEFDNLE+QL V EMPEVPT+  SEE EKLDLP+VPTK PVAS     +AEI PAE++TK +V+EEPLPA
Sbjct:    1 MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTK-ESEESEKLDLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 219          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: VP202_ARATH (Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.893e-75
Identity = 158/226 (69.91%), Postives = 171/226 (75.66%), Query Frame = 1
Query:  163 MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVP-TEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 837
            MGNLFVKKPKIT+VDRAILSLKTQRRKL QYQQQL+ VIEAEK AARDLI                        VD WLINVEQQLADIEL SKQKAVFESLK G NAIKAIQSE+NL+DVQKLMDDT EAKAYQDE++AILGEKLSAEDEEEILAEFDNLE+ L V++MPEVP TE   EE EK+DLP+VPTK PVAS              STKR+V+EEPL A
Sbjct:    1 MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMPEEPEKMDLPDVPTKAPVASN----------ETTSTKRKVLEEPLEA 216          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_DANRE (Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 5.009e-25
Identity = 68/201 (33.83%), Postives = 108/201 (53.73%), Query Frame = 1
Query:  163 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 759
            MGNLF KK   ++T+ DRA+L LK QR KL QYQ+++   ++ E+  A+ L+                         +  + N+E+ + DIE A  +  V E LK G + +K +   +++E+V+K+MD+T +A  YQ +I+ +L   L+ EDEE +LAE + +    A  E+PEVP E         +LP VP + PV  +
Sbjct:    1 MGNLFGKKKATRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSLTQEDEEAVLAELEAITQGEADLELPEVPGE---------ELPEVPEQEPVREK 192          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHM6A_XENLA (Charged multivesicular body protein 6-A OS=Xenopus laevis GN=chmp6-A PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.044e-22
Identity = 65/201 (32.34%), Postives = 107/201 (53.23%), Query Frame = 1
Query:  163 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEG-PSEEQEKLDLPNVPTKVPVAS 756
            MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++   ++ E+  A+ L+                         D  + N+E+ + DIE A  +  V E LK G   +K +   +++E+V+++MD+T+E   YQ +I+ +L   L+AEDEE IL E + +  +    E+PE P+E  P    EK  + N P    +A+
Sbjct:    1 MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQEQLLEKTDNQISNLEKMVEDIEFAQIEMKVIEGLKVGNECLKKMHEVMSIEEVERIMDETQEGIEYQRQIDEMLSGSLTAEDEEAILEELEAITQE--DLELPEAPSEPLPDTIPEKQAVKNKPKPQMIAA 199          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHM6B_XENLA (Charged multivesicular body protein 6-B OS=Xenopus laevis GN=chmp6-B PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 6.770e-22
Identity = 66/201 (32.84%), Postives = 108/201 (53.73%), Query Frame = 1
Query:  163 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEE-QEKLDLPNVPTKVPVAS 756
            MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++   ++ E+  A+ L+                         D  + N+E+ + DIE A  +  V E LK G   +K +   +++E+V+K+M++T+E   YQ +I+ +L   L+AEDEE IL E + +  +    E+PE P+E  S+   EK  + N P    VA+
Sbjct:    1 MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQEQLLEKTDNQISNLEKMVDDIEFAQIEMKVIEGLKVGNEWLKKMHEVMSIEEVEKIMEETQEGIEYQRQIDEMLSGSLTAEDEEAILEELEAITQE--DLELPEAPSEPLSDTVPEKQAVKNRPKPQLVAA 199          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_DICDI (Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.842e-22
Identity = 64/182 (35.16%), Postives = 98/182 (53.85%), Query Frame = 1
Query:  181 KKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLP 726
            K+ KI+  DRA+L+LK QR KL  YQ Q+  +       A++                              L N+E+ +A++E A  Q  +FESLK G  ++K IQ E++LEDV+ LM++T EA  YQ++I+  L  K S E+E+++L E D +E QL  Q+ P+V    P  +  K++LP
Sbjct:   14 KEDKISKTDRAVLNLKIQRDKLKNYQTQVLEIA-----IAKECSKAGKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKEIQKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYPKV----PETQLPKIELP 186          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_CHICK (Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 5.731e-21
Identity = 65/202 (32.18%), Postives = 107/202 (52.97%), Query Frame = 1
Query:  163 MGNLFVKK--PKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNL-EAQLAVQEMPEVPTEG-PSEEQEKLDLPNVPTKVPVAS 756
            MGNLF +K   ++T+ D+A+L LK QR KL QYQ+++   +E E+  AR L+                         D  + N+E+ + DIE    +  V E LK G   +  +   +++E+V++++ +T++A  YQ +I+ IL   L+ EDE+ IL E + + + QL   E+P+VP+E  P E  E   + N P    VA+
Sbjct:    1 MGNLFGRKRRSRVTEQDKAVLQLKQQRDKLRQYQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLTEEDEDAILEELNAITQEQL---ELPDVPSEPLPEEPPEATPVKNRPKPELVAA 199          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_HUMAN (Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 2.408e-19
Identity = 60/201 (29.85%), Postives = 102/201 (50.75%), Query Frame = 1
Query:  163 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 759
            MGNLF +K   ++T+ D+AIL LK QR KL QYQ+++   +E E+  AR L+                         +  + ++E  +  IE    +  V E L+ G   +  +   +++E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E   +  +    E+PEVP+E   E+        +P  VPV +R
Sbjct:    1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSEPLPEK--------IPENVPVKAR 191          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_PONAB (Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 3.145e-19
Identity = 60/201 (29.85%), Postives = 102/201 (50.75%), Query Frame = 1
Query:  163 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASR 759
            MGNLF +K   ++T+ D+AIL LK QR KL QYQ+++   +E E+  AR L+                         +  + ++E  +  IE    +  V E L+ G   +  +   +++E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E   +  +    E+PEVP+E   E+        +P  VPV +R
Sbjct:    1 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQI--ELPEVPSEPLPEK--------IPEDVPVKAR 191          
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: VPS20_SCHPO (Vacuolar protein sorting-associated protein 20 OS=Schizosaccharomyces pombe GN=vps20 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.006e-19
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  178 VKKPKITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVAS 756
            V   KI D DR+ILS+K QR KL +Y ++L+ + + E   AR  +                          G L N+EQ L+ IE    QK V   L+ GTN I+ +Q+++ LE V ++ +D +EA +Y DE+N +L  ++S + E+EI  E D+L  +   +++ ++   G +       LP+VP K  + S
Sbjct:    3 VNSSKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVDEVNDMLQGRMSRDQEDEIQEELDSLIREQEDEKVKDLEKPGFTPSTGVDVLPSVPLKNAIPS 195          
The following BLAST results are available for this feature:
BLAST of DY256904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VP201_ARATH5.100e-7870.67Vacuolar protein sorting-associated protein 20 hom... [more]
VP202_ARATH6.893e-7569.91Vacuolar protein sorting-associated protein 20 hom... [more]
CHMP6_DANRE5.009e-2533.83Charged multivesicular body protein 6 OS=Danio rer... [more]
CHM6A_XENLA1.044e-2232.34Charged multivesicular body protein 6-A OS=Xenopus... [more]
CHM6B_XENLA6.770e-2232.84Charged multivesicular body protein 6-B OS=Xenopus... [more]
CHMP6_DICDI8.842e-2235.16Charged multivesicular body protein 6 OS=Dictyoste... [more]
CHMP6_CHICK5.731e-2132.18Charged multivesicular body protein 6 OS=Gallus ga... [more]
CHMP6_HUMAN2.408e-1929.85Charged multivesicular body protein 6 OS=Homo sapi... [more]
CHMP6_PONAB3.145e-1929.85Charged multivesicular body protein 6 OS=Pongo abe... [more]
VPS20_SCHPO7.006e-1931.61Vacuolar protein sorting-associated protein 20 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DE02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256904 ID=DY256904; Name=DY256904; organism=Citrus clementina; type=EST; length=1036bp
GGCTGAAACTTTAACAAACAGAAACTAGAAAAGAATGAGGGCGCTCTAGG
ACTGAAAAAACCCATCCCCCCATTCTTTTCTTAATTTAATTATCATATTT
TATCGACATATTTGAAATTTCAATCATAATATACCTAAGTTTTTTTTAAA
AAAAATTGAAAGATGGGAAATTTGTTTGTGAAGAAACCGAAGATCACAGA
TGTGGATCGAGCGATTCTGTCTCTAAAGACCCAGCGACGCAAGCTAGCTC
AGTATCAACAGCAGCTTGATGCTGTCATTGAAGCAGAAAAGTAAGCTGCT
AGAGACTTGATTCGTCAGAAGAGAAAGGATAGGGCGTTGTTAGCATTGAA
GAAGAAAAAAGCACAGGAAGAATTATTGAAACAGGTTGATGGCTGGCTCA
TTAATGTTGAGCAACAATTGGCAGATATTGAATTAGCGAGCAAGCAGAAA
GCTGTATTTGAGAGTTTGAAGTCAGGTACTAATGCCATTAAGGCAATACA
AAGTGAGATAAACCTGGAGGACGTTCAAAAGTTAATGGATGATACTGAAG
AAGCTAAGGCTTATCAGGATGAAATTAATGCAATATTGGGTGAGAAATTA
TCAGCAGAAGATGAAGAGGAGATTTTGGCAGAATTTGACAACTTGGAAGC
TCAGCTTGCAGTTCAAGAAATGCCAGAAGTGCCAACTGAAGGACCATCCG
AAGAACAAGAGAAGTTGGATCTTCCTAATGTTCCAACCAAAGTTCCTGTT
GCTTCCCGTGTGGTTGCAGATGATGCTGAAATTGCTCCAGCTGAAGCCTC
CACAAAGAGAAGAGTTATGGAGGAGCCGTTGCCGGCATAATTGACTGAAC
GTTTAAACATTATTCGAAATTGCGTAAACAGCCCTTGACGGACTATTTCC
CGGGTGGGGTTGGTCAGCTCATGTACTAATTCTTTTGGTTTGTTCTTGGG
TACTTTTCCGGCTTGAATTTTTAGGAATTACAAGGGTTCCCAAATAAAAA
TCCTGGGACAAAGGTGGAAATTTATTGGGGACTATT
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