DY256908

Overview
NameDY256908
Unique NameDY256908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1062
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256908_ssr888 microsatellite DY256908_ssr888:888..899. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY256908 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.374e-17
Identity = 71/221 (32.13%), Postives = 104/221 (47.06%), Query Frame = 1
Query:  208 PGIVVGQEWWGVDFEINNHAVKISQL-NPGFEALIPHLYRGKVGLDTAEAQHLMSGL-----DWPGAVKDIHASVNWL---RANGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDV-KTAKALEE*LKASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDPDPAAVELAWSRFPSWMTRYL 837
            PG++V  EWWG++  ++N      +    GF A  P  Y GK   +  +A  LM+ +     D   A+    ASV++L   R    KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V   AK + +    +GV  +V +Y G  HAF+N          E   D  DP   + AW+   ++   YL
Sbjct:   26 PGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEVIDIAKKVWK----NGVDVKVKVYSGVTHAFLN----------EKREDVYDPCRAQDAWNLTVAFFKEYL 230          
BLAST of DY256908 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 5.220e-17
Identity = 67/214 (31.31%), Postives = 104/214 (48.60%), Query Frame = 1
Query:  208 PGIVVGQEWWGVDFEINNHAVKISQLNPGFEALIPHLYRGKVGL--DTAEAQHLMSGLDWPGAVKDIHASVNWLRA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTAKALEE*LKASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDPDPAAVELAWSRFPSWMTRYL 837
            P +VV  E  G++  I + A ++++   G+ AL P       G   +  + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +   A E  LKA+   YE +IYPG  H F N   D   R         D +A +LAW R   W  +YL
Sbjct:   82 PAVVVVHENRGLNPYIEDVARRVAKA--GYIALAPDGLSSVGGYPGNDDKGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN---DSTPRY--------DKSAADLAWQRTLKWFDKYL 277          
BLAST of DY256908 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.886e-15
Identity = 66/219 (30.14%), Postives = 101/219 (46.12%), Query Frame = 1
Query:  208 PGIVVGQEWWGVDFEINNHAVKISQL-NPGFEALIPHLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWL---RANGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDV-KTAKALEE*LKASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDPDPAAVELAWSRFPSWMTRYL 837
            P ++V  EWWG++  ++N      +L + GF A  P  Y+G+   +  +A  LM+ +         +   ASV ++   R    KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +    K P+     E D FV   +V   AK + +    +GV  +V ++ G  HAF+N          E   D  DP     AW    ++   YL
Sbjct:   26 PAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEVIDIAKTVWK----NGVDVQVKVFSGVTHAFLN----------EKREDVYDPKRACEAWELAVNFFKTYL 230          
The following BLAST results are available for this feature:
BLAST of DY256908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
USF_AQUPY1.374e-1732.13Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
YGHX_ECOLI5.220e-1731.31Putative uncharacterized protein yghX OS=Escherich... [more]
DLHH_AQUAE4.886e-1530.14Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2DE11ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256908 ID=DY256908; Name=DY256908; organism=Citrus clementina; type=EST; length=1062bp
ACACCCGTGGTGAGGATCACGACCACCGCCGCCACCGTCGCCAGGTTGGC
GATTCTGAGCGGGACTAGGACCACGGCTTTCTTGATCTGCGTGGAGGGCT
TTGCTGGCCCATCTCTGGCCTAGACCGCCGGTTCGCCCTTCATGAAAAGC
CAAATGCAGAGACTTGATGCGACTTTTGATGCTGATGTGGTTGGCAAACA
CGACCCCCCTGGGATTGTTGTAGGTCAAGAGTGGTGGGGTGTTGATTTTG
AGATCAACAACCATGCTGTCAAAATCTCCCAACTAAACCCTGGATTCGAG
GCACTTATACCACATTTATATCGGGGAAAGGTTGGTTTGGATACTGCTGA
AGCACAGCACTTGATGAGTGGTCTTGATTGGCCAGGTGCTGTCAAGGATA
TCCACGCTTCAGTTAATTGGCTTAGGGCAAATGGTTCCAAGAAGGTTGGC
GTGACTGGATATTGCATGGGAGGTGCTCTCGCTATTGCAAGTTCTGTCTT
AGTTCCTGAGGTTGATGCTGTTGTTTCATTTTATGGGGTTCCCCCACCTG
AGCTCGCCGATCCTACCCAGGCTAAGGCACCTGTTCAAGCTCATTTTGGG
GAGCTTGACAATTTTGTTGGCTTTTCAGACGTGAAAACTGCCAAAGCATT
GGAGGAATAGCTGAAAGCATCTGGTGTTCCATATGAGGTACATATTTATC
CTGGCAGTGCACATGCTTTCATGAACATTTCTCCGGATGGAGTGAAGAGG
AGGAAAGAAATGGGAATGGATGATCCCGATCCCGCCGCAGTTGAGCTGGC
GTGGTCTCGCTTTCCATCATGGATGACCCGCTACTTATTTGCCTTAGTAA
TTTCCTAATTTTAATGAATCTATGGGGGTTTACCTCCCCTTCCTTCCTTA
AATAAATAACCCGTGGGGTTGCCCTCTACCCCACACTATAACCCCAGCTC
GCAAGAACCCTTTTTTTTTCCAAAGGGGGTTCGATACCGGGGAATTTTTT
TGGTTTTGATTTTTGCCTTTTTTTGTTATTGTTTGGCGGAAGGGCTTTAT
TTTTTTTTCCCC
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