DY257788

Overview
NameDY257788
Unique NameDY257788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length890
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10308 contig Ccv1_Contig10308:781..1670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257788 vs. ExPASy Swiss-Prot
Match: CYP37_ARATH (Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic OS=Arabidopsis thaliana GN=CYP37 PE=1 SV=3)

HSP 1 Score: 416.387 bits (1069), Expect = 1.098e-115
Identity = 205/263 (77.95%), Postives = 232/263 (88.21%), Query Frame = 2
Query:    2 EKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLMEGQDRLVLP 790
            +KGS LY +LIDGKGGLQAL+  IK QDPDKVS+GLA+SLDTVA+LELLQA GLSFLLP+QY  YPRL GRG VE+TIEK DGS+FS EAGG+ RK+AT+Q+V+DGYSAPLTAGN AKLV  GAYDG +LN  NQAV+TE G  K    ++PLE+MPSGQFEPLYRT L+VQDGELPVLPLSVYGAVAMAHSE+SEEYS+PYQFFFYLYDKRN+GLGGLSFDEGQFSVFGYT  G+DIL QIKTGD+I+SAKL+EGQDRL LP
Sbjct:  194 DKGSELYTTLIDGKGGLQALITSIKKQDPDKVSLGLAASLDTVADLELLQASGLSFLLPQQYLNYPRLAGRGTVEITIEKADGSTFSAEAGGDQRKSATVQIVIDGYSAPLTAGNFAKLVTSGAYDGAKLNTVNQAVITEDGSGKVESVSVPLEVMPSGQFEPLYRTPLSVQDGELPVLPLSVYGAVAMAHSENSEEYSSPYQFFFYLYDKRNSGLGGLSFDEGQFSVFGYTIAGKDILGQIKTGDIIKSAKLIEGQDRLSLP 456          
BLAST of DY257788 vs. ExPASy Swiss-Prot
Match: PPI3_SYNY3 (Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408 OS=Synechocystis sp. (strain PCC 6803) GN=sll0408 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.019e-28
Identity = 89/276 (32.25%), Postives = 132/276 (47.83%), Query Frame = 2
Query:    5 KGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYN-----------LPLEIMPSGQFEPLYRTALNVQDGELP--VLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLMEGQDRLVLPN 793
            +  TL  S+   K  L AL + ++ +D ++V     S+L  + +LE L      F +PE++   P+L GR  VE+T  KG                  + +V+DGYSAP+ AGN   LV    YDG     +    +T+ G   G +             +PLEI+  G+  P+Y   L      LP   LP + YGA+A+A  E +E      QFFF+ +D       G +  +G++SVFGY   G++ L Q+  GD I SAK++ G D LV  N
Sbjct:  125 EAETLLGSI---KTDLTALTEAVEAKDKEQVISFRKSALTAIGDLEALMVTDFPFAIPEEFANLPQLKGRATVEMTTNKGP-----------------LTIVVDGYSAPINAGNFVDLVQRKFYDGLPFIRSEDFFVTQAGDPPGPEAGFIDPQTKEYRAIPLEILVKGEEGPIYGMTLEDAGMYLPELALPFNAYGAIALARPE-TEPNGGSSQFFFFKFDTELTP-PGFNLMDGRYSVFGYVVDGKETLEQLSEGDKIVSAKVISGADNLVNGN 378          
BLAST of DY257788 vs. ExPASy Swiss-Prot
Match: CYP38_ARATH (Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.683e-23
Identity = 78/264 (29.55%), Postives = 131/264 (49.62%), Query Frame = 2
Query:   41 KGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVL--------TEKGLDKGSDYN--LPLEIMPSGQFEPLYRTALN---VQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLMEGQDRLVLPN 793
            + G+Q +LK ++D+  D V+      L  V  +E     G  + +PE+Y+  P L GR  V++ ++  D  +          +    ++VLDGY+AP+TAGN   LV    YDG  +  ++  V+         E  +D  ++    +PLEIM +G+  P Y + L    +   ++ V+P + +G +AMA  E+ E  S   Q F+ L +           D G+++VFGY T   D L  +K GDVI+S +++ G + L  P+
Sbjct:  181 EAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNI---------EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQV-VIPFNAFGTMAMAR-EEFENDSGSSQVFWLLKESELTPSNSNILD-GRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENLANPS 432          
BLAST of DY257788 vs. ExPASy Swiss-Prot
Match: TLP40_SPIOL (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Spinacia oleracea GN=TLP40 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.091e-22
Identity = 84/279 (30.11%), Postives = 133/279 (47.67%), Query Frame = 2
Query:    2 EKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVL--------TEKGLDKGSDY--NLPLEIMPSGQFEPLYRTALNVQDGELPV------LPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLMEGQDRLVLP 790
            ++G  L   L  G G LQ +   +++++ + V+      L  V  +E     G  + +PE+Y+  P L GR +VE+ ++  D  +               ++VLDGY+AP+TAGN   LV    YDG  +   +  V+         E  +D  ++    +PLEIM  G+  P+Y + L     EL +      LP + +G +AMA  E+ E  S   Q F+ L +           D G+++VFGY T  +D L  +K GDVI+S + + G D LV P
Sbjct:  183 DRGVELLDKLEAGMGELQQI---VENRNREGVAPKQRELLQYVGSVEEDMVDGFPYEVPEEYQTMPLLKGRAVVEMKVKVKDNPNVD---------NCVFRIVLDGYNAPVTAGNFLDLVERHFYDGMEIQRRDGFVVQTGDPEGPAEGFIDPSTEKPRTIPLEIMVEGEKVPVYGSTLE----ELGLYKAQTKLPFNAFGTMAMAR-EEFENNSGSSQIFWLLKESELTPSNANILD-GRYAVFGYVTDNQDYLADLKVGDVIESVQAVSGVDNLVNP 443          
BLAST of DY257788 vs. ExPASy Swiss-Prot
Match: PPI1_SYNY3 (Probable peptidyl-prolyl cis-trans isomerase sll0227 OS=Synechocystis sp. (strain PCC 6803) GN=sll0227 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.603e-19
Identity = 77/219 (35.16%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  179 EQYKKY-PRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDY------------NLPLEIMPSGQFE-----PLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLMEGQDRL 781
            + YK Y PRL G+  VE+ +             G+P     I + +DG +AP+TAGN   LV  G Y+G   +      + + G  KG               N+PLEI      E     P+Y  AL  Q G  PV+     GAVAMA S+  +  SA  QF+F L D+         F +G ++VFGY T G D++ +IK GD IQSAK++ GQ+ L
Sbjct:   53 DPYKDYKPRLNGKATVEMMVN------------GQP-----IIIEVDGENAPITAGNFVDLVEQGFYNGLTFHRVVDGFVAQGGDPKGDGTGGYVDKNTQRPRNIPLEIKVDPAVENAPETPVYSRALGNQAG-FPVMLPHKTGAVAMARSQMPD--SASSQFYFTLSDETG-------FLDGDYAVFGYVTQGMDVVLKIKQGDKIQSAKVITGQNNL 244          
The following BLAST results are available for this feature:
BLAST of DY257788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CYP37_ARATH1.098e-11577.95Peptidyl-prolyl cis-trans isomerase CYP37, chlorop... [more]
PPI3_SYNY31.019e-2832.25Putative thylakoid lumen peptidyl-prolyl cis-trans... [more]
CYP38_ARATH1.683e-2329.55Peptidyl-prolyl cis-trans isomerase CYP38, chlorop... [more]
TLP40_SPIOL1.091e-2230.11Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPI1_SYNY35.603e-1935.16Probable peptidyl-prolyl cis-trans isomerase sll02... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BG12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257788 ID=DY257788; Name=DY257788; organism=Citrus clementina; type=EST; length=890bp
GGAAAAGGGTTCTACACTGTATGCATCTCTCATTGACGGGAAGGGTGGAC
TGCAAGCACTTCTAAAGTGTATCAAGGATCAGGACCCAGATAAAGTATCT
GTTGGCCTTGCATCTTCACTGGATACAGTTGCAGAACTGGAGTTGCTACA
GGCTCCTGGGTTATCCTTTTTGTTGCCAGAGCAATACAAGAAATATCCGA
GGTTAACAGGGAGAGGAATTGTCGAACTTACCATTGAGAAGGGAGATGGT
TCATCATTTTCTCCCGAAGCTGGTGGTGAACCAAGGAAAACTGCCACAAT
TCAGGTTGTTCTAGATGGATATTCAGCACCATTAACAGCTGGGAATGTCG
CAAAGCTGGTGATTGATGGAGCATATGATGGGACAAGGCTAAATTGTACG
AACCAAGCTGTTCTGACAGAAAAAGGTCTAGATAAGGGCAGTGATTACAA
TTTGCCCTTGGAAATAATGCCATCAGGGCAATTTGAGCCATTGTACAGGA
CAGCCTTAAACGTGCAGGATGGAGAATTGCCGGTTCTTCCTTTATCAGTA
TATGGAGCTGTTGCAATGGCACATAGTGAAGACTCAGAGGAATACTCTGC
CCCATATCAGTTTTTCTTCTACCTTTATGACAAAAGAAATGCTGGCCTAG
GGGGGTTATCTTTCGATGAAGGGCAATTTTCCGTTTTTGGGTACACAACG
GTGGGGAGAGACATTCTGCCACAGATCAAAACTGGGGATGTCATTCAATC
TGCGAAGCTTATGGAAGGTCAAGATCGCCTTGTATTGCCAAATGAGAGTT
GATTTGCGGATTATCTTCATCTCCTTTCCTGACTTTTTGCTGTATTCCTA
AATGAGAGTTGCATTTTTAAAGAATAAACAGCTTTTTAGT
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