DY257797

Overview
NameDY257797
Unique NameDY257797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length845
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9981 contig Ccv1_Contig9981:4..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.494e-18
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            +TC QV+  L PCI+Y   GGAV PACC+GIR +N  +KTT DR+T CNC+K+ +A +PG+N +    LP  C    PYK++   +C+
Sbjct:   27 LTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCA 114          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            ITC QVT  L PCI Y   GGAV PACC+GIR +N  ++TT DR+T CNC+K  A  I G+N +    LP  C    PYK++   +C+
Sbjct:   25 ITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCA 112          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 379
            I+C QVT  L PC  Y   GG V PACC+G+R LN A+KTT DR+T C C+K   A    +N +  N+LP  C     YK+T ++DCSK
Sbjct:   26 ISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSK 114          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 379
            ++C QV+  L PCISY   GGAV PACC G+++LN+A+KTT DR+  C C+K     I G+N     + P  C    PYK++   DCSK
Sbjct:   26 LSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSK 114          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            ITC QV+  L PCI+Y   GGAV PACC+GIR +N  ++TT DRR  CNC+K+ +  IPG+N +    LP  C    PYK++   +C+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCA 88          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            ITC QV+  L PCI+Y   GGAV PACC+GI+ +N  +KTT DR+  CNC+K  A  + G+N     +LP  C    PYK++   +C+
Sbjct:   25 ITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCA 112          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            ITC QV+  L PCI Y   GGAV PACC+GIR +N  ++TT DR+  CNC+K+ +A +PG+N +    LP  C    PYK++   +C+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCA 88          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            ITC QV+  L PCI Y   GGAV PACC+GIR +N  ++TT DRRT CNC+K+ +  I G+N +    LP  C    PYK++   +C+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCA 88          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.278e-17
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            ITC QV+  L PCI Y   GGAV PACC+GIR +N  ++TT DR+  CNC+K+ +A +PG+N +    LP  C    PY+++   +C+
Sbjct:   27 ITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCA 114          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.071e-16
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS
Sbjct:   28 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCS 115          
The following BLAST results are available for this feature:
BLAST of DY257797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
NLTP_PRUAV1.494e-1847.73Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO4.348e-1848.86Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_GERHY4.348e-1848.31Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP_HELAN5.678e-1846.07Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDO7.416e-1847.73Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_PYRCO1.265e-1745.45Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUPE2.158e-1746.59Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR2.158e-1747.73Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUDU6.278e-1745.45Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP2_ORYSI1.071e-1644.32Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CA09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257797 ID=DY257797; Name=DY257797; organism=Citrus clementina; type=EST; length=845bp
GATTGCATAAACCATAATTACAATGGCTGCTCAATTTCGAAAGGTGCCAT
TAACAGTGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCCTGAAT
GCAGCAACAACAATAACATGTGAGCAAGTGACAATCTGGCTGACACCATG
CATCAGCTATGGCGTATTGGGTGGGGCTGTTCAACCAGCTTGTTGTGATG
GCATTAGAGCTTTGAATGCTGCTTCAAAAACCACAGAAGATAGAAGGACC
CAATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTCAACTA
TGATCGTGTTAATACGCTTCCTGATATTTGTCGGAGTAAATGTCCTTATA
AACTTACACATGATCTTGATTGCTCTAAGTACGCCCTTAATTCTTATCTT
AGCTAGCTTGTTATTGCTTGTTTTCTTTTTATAATCTTCTCTGGCATATG
TGTATATATATGTTAAGATTAAATTATTTATATTTTTATTCAATAATTAC
CATCACAATATTAAGAAAAAATCTTAACACAATCTCTCGACCAATTAATT
TTTACCTTTTGGGTTTGATTTTATTGTAGGGTGAACTAAATCTGCAGTTT
GCACGGGCGGGGGTATCTGGTTTATTGATAAGTCACGAATGAAGTCTACA
AAGAGAATAAGGCTGCTACTTTTGGCTTATTGTCCTAAAAATATCTTCTA
TTACTCTAAAATAAAGCCTGAGATATTTTATTGGCATTTTGCATTTTACA
TTATTATACAAGTCATTCTAATGATATGTGTTGCAATGTAAACATATATG
ATATTTACGTGTGCAAAGTGAATGTCCTTTCTTTATTCTTATGGC
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