DY257808

Overview
NameDY257808
Unique NameDY257808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9860 contig Ccv1_Contig9860:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.782e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD DIQ+           A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNK LKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.782e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD DIQ+           A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNK LKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.782e-46
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD DIQ+           A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNK LKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.773e-46
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MS+FD  +           AEDSGAG+K+YVH+RVQQRNGRKSLTTVQGLKK++SYNK LKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE+IK+HGF
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.773e-46
Identity = 92/115 (80.00%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD DIQ+           A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSY+K LKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.773e-46
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MSD ++QV           AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY+K LKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.361e-45
Identity = 90/113 (79.65%), Postives = 97/113 (85.84%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MS+ D QV           AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY K LKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.668e-44
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            MS+ D QV           AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY K LKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I++HGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.980e-38
Identity = 78/113 (69.03%), Postives = 88/113 (77.88%), Query Frame = 2
Query:  143 MSDFDIQVXXXXXXXXXXKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            M D DIQ+          +  D+   +KEYVHIR+QQRNGRKSLTTVQGLKKE SY+K LKDLKK  CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.676e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of DY257808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SPOST1.782e-4680.87Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ1.782e-4680.87Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI1.782e-4680.87Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_SALBA6.773e-4678.76Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_MAIZE6.773e-4680.00Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI12_ARATH6.773e-4679.65Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH3.361e-4579.65Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL1.668e-4478.76Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR3.980e-3869.03Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG1.676e-2860.67Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CD07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257808 ID=DY257808; Name=DY257808; organism=Citrus clementina; type=EST; length=559bp
GGGGGAGCTTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATCT
TATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGTC
TGAGCATTCCGGTTGTTGGGCCCCTTGCATCAGCTGAGGTTCATGTCTGA
TTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTGATGCAAAGG
CTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCAG
CAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAGA
ATTTAGTTACAACAAAACCCTCAAGGACCTCAAAAAGGAATTTTGCTGCA
ATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCAA
GGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGCTGGGATTGT
GAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTAAACAGCAACTTCC
GTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAGTGCAGAACATGC
TATTGATAC
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