DY257815

Overview
NameDY257815
Unique NameDY257815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1044
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257815 vs. ExPASy Swiss-Prot
Match: LEC2_CLALU (Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.979e-14
Identity = 81/270 (30.00%), Postives = 119/270 (44.07%), Query Frame = 1
Query:   10 MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYG--AIESSG-ALSITPGPPPNLPIR-KVGRVLYGKPLSLQRSFID------TTITIKISRHQNYTDRAGDGMTFIFASDKTGPSAKGVGEYLGLQSSPGDKFPPL----AVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDV--DLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVK--VVEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 765
            + F+ L  + L   +SS       +SF+F +F  D  D   LI  G   I S G +L +T       P+R  VGR LY  PL L  S  +      TT T  +S   + T+  GDG+ F  A  +T       G  LGL S        L    AVE DT +N N                + N + S   V    ++G     +I YN D  +LSV ++Y      +   V   ++L   +P  V VGF+ +TG ++++H +++WTFNS
Sbjct:   20 LAFITLFLMLLNRVNSS-----DSLSFTFDNFRPDQRD---LILQGDAKISSGGDSLQLTKTDTSGKPVRGSVGRALYYTPLHLWDSSTNRLASFQTTFTFVLS---SPTNNPGDGIAFFIAPPETTIPPGSSGGLLGLFSPDNALNNSLNQIVAVEFDTFVNNN------WDPSHRHIGIDVNTIKSSATVRWQRENGSLATAQISYNSDTKKLSVVSSYPNTQANEDYTVSYDVDLKTELPEWVRVGFSGSTGGYVQNHNILSWTFNS 272          
BLAST of DY257815 vs. ExPASy Swiss-Prot
Match: LEC2_CYTSC (2-acetamido-2-deoxy-D-galactose-binding seed lectin 2 OS=Cytisus scoparius PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.404e-12
Identity = 71/245 (28.98%), Postives = 103/245 (42.04%), Query Frame = 1
Query:   82 ISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSL-------QRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKTGPSAKGVGEYLGL---QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSVYAAY-SGETLVK---VVEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFNS 765
            +SFSF  F  D   N  L     I  +G L +T           +GR LY  P+ +       + SF  T  +  IS   N +  A DG+ F  A   T P +   G YLGL    SS       +AVE DT  N                  +S  V+S      K+G    V I Y P    L     Y SG+T  K   ++   ++L   +P  V +GF+A TG   +++E+H++++W+F S
Sbjct:    4 LSFSFTKFKTDQ-KNLILQRDALITPTGKLQLTTVENGKPAAYSLGRALYSTPIHIWDKSTGDEASFA-TFFSFVISDAPNPSTAATDGLAFFLAPADTQPQS--AGGYLGLFEKDSSYNSSNQIVAVEFDTYYNSAWDPQTNPHIGIDVNTIKSKKVSSW---GFKNGNVATVLITYQPSSKSLVASLVYPSGQTSDKTSYIISANVDLKATVPEWVRIGFSATTGQTDNYIETHDILSWSFKS 241          
BLAST of DY257815 vs. ExPASy Swiss-Prot
Match: LEC_ERYCG (Lectin OS=Erythrina crista-galli PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.445e-11
Identity = 70/241 (29.05%), Postives = 103/241 (42.74%), Query Frame = 1
Query:   82 ISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPI-RKVGRVLYGKPLSLQRSFIDTTITIK----ISRHQNYT-DRAGDGMTFIFASDKTGPSAKGVGEYLGL--QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLD--VDLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVKVVEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFNS 765
            ISFSF  F   + DN TL     I  SG L +T      +P     GR LY KP+ +  S   T  + +     S  Q YT     DG+ F     K+ P A+G G YLG+   S   + +  LAVE DT  N                  + N + S+      L +G+   V I Y+     L V   Y     +  + + +++  ++P  V VG + ATG   D  E+H+V +W+F +
Sbjct:    4 ISFSFSEFEPGN-DNLTLQGAALITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHMWDSTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKP-AQGYG-YLGVFNNSKQDNSYQTLAVEFDTFSNP------WDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDAPSKILHVVLVYPSSGAIYTIAEIVDVKQVLPDWVDVGLSGATGAQRDAAETHDVYSWSFQA 235          
BLAST of DY257815 vs. ExPASy Swiss-Prot
Match: LEC_BOWMI (Lectin OS=Bowringia mildbraedii PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.115e-11
Identity = 70/240 (29.17%), Postives = 107/240 (44.58%), Query Frame = 1
Query:   82 ISFSFPSFAKDSCDNKTLICYG--AIESSGALSITPGPPPNLPIR-KVGRVLYGKPLSLQRSF-----IDTTITIKISRHQNYTDRAGDGMTFIFASDKTG-PSAKGVGEYLGL---QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVKVVEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 765
            + F+F  F     D   LI  G  ++ S+ AL +T       P    VGR LY  P+ L +S       +TT T  IS+  +    A   +TF  AS  T  PS  G G  LGL    ++ G     +AVE DT  N ++                S   +     D ++G+     I YN    +LSV ++Y   + V VV   + L+++ P  V VGF+A TG + +++ ++ W+F S
Sbjct:    4 VCFTFTDFESGQQD---LIFQGDASVGSNKALQLTKVDSKGNPQGGSVGRALYTAPIRLWQSSSLVASFETTFTFSISQGSSTPAAA---LTFFIASPDTKIPSGSG-GRLLGLFGSSNNAGSDNGVVAVEFDTYPNTDIGDPNYRHIGIDVNSIRSKAASKW---DWQNGKTATAHISYNSASKRLSVVSSYPNSSPV-VVSFDVELNNVGPPDVRVGFSATTGQYTQTNNILAWSFRS 232          
The following BLAST results are available for this feature:
BLAST of DY257815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LEC2_CLALU8.979e-1430.00Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1[more]
LEC2_CYTSC8.404e-1228.982-acetamido-2-deoxy-D-galactose-binding seed lecti... [more]
LEC_ERYCG2.445e-1129.05Lectin OS=Erythrina crista-galli PE=1 SV=1[more]
LEC_BOWMI7.115e-1129.17Lectin OS=Bowringia mildbraedii PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CE07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257815 ID=DY257815; Name=DY257815; organism=Citrus clementina; type=EST; length=1044bp
GGAAAAAAAATGATTTTCCTACTACTCCTCTCCGTTTTTCTTCGCGGAGC
TTCTTCATCAATCCTTTCCGAAGACACACCTATTAGCTTCTCATTTCCCT
CATTCGCCAAAGACAGTTGTGACAATAAGACCCTCATTTGCTACGGAGCG
ATTGAAAGTTCCGGCGCCTTAAGCATCACACCAGGCCCTCCACCAAACCT
GCCGATCAGAAAGGTTGGACGGGTTTTATACGGCAAGCCTCTGAGTTTAC
AGCGATCTTTTATTGATACCACCATCACCATTAAGATCTCACGCCATCAG
AATTACACTGATCGTGCCGGAGATGGCATGACGTTCATTTTTGCAAGCGA
TAAAACCGGTCCATCAGCAAAGGGCGTCGGCGAATATCTTGGACTGCAGT
CTTCACCAGGCGATAAATTTCCTCCATTAGCCGTGGAGCTGGACACATGC
CTGAACAAGAACCTGAATGATCCAGATGATAACCATATTGGCATCGACAT
AAACGGAATCGAATCAAATCCAGTTAATAGTCTGCTTGACGTTGATCTCA
AAAGTGGACGAGCAATCCAGGTTCGAATTTATTACAATCCAGACTTTGGA
CAACTCTCTGTTTATGCGGCATATTCGGGGGAAACACTTGTGAAGGTGGT
TGAAAAACCCATTAACCTGTCAGATATAATTCCAACGCCCGTCTATGTTG
GATTCACAGCAGCTACGGGGGACTTTTTAGAAAGCCATGAGGTTATAAAT
TGGACCTTCAACTCGTTCCCAGTGCCGCCTTCTCTCAAGGAGAAAAACCT
GGTGATGCCAATATAATTCTAAACCCGTCTTTGAAAAACCATGTCACATA
AAATTATAATCAATAATAATTAAATATCACCAATAAAAGTGACTTGGCTT
CTTGCATTAAAATTATTGAATAAAATGATAGGCAGCGACTAGGGATATTA
ACTGTTTGCTTTGCTGTCTGGAAAGGTACTGTTTGGTGCTTATGTAAAAA
ATGCTCATATTTCAGCTTTCAATTGGTTAACGTTGCCAGCTTTT
back to top