DY257820 | Citrus Genome Database

Overview


Name	DY257820
Unique Name	DY257820
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1236

Libraries


Library Name	Type
AbsCOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
DY257820_ssr374	microsatellite	DY257820_ssr374:374..391.	BLAST: Citrus ESTs to Prunus persica proteins V1
DY257820_ssr294	microsatellite	DY257820_ssr294:294..314.	BLAST: Citrus ESTs to Prunus persica proteins V1
DY257820_ssr800	microsatellite	DY257820_ssr800:800..811.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of DY257820 vs. ExPASy Swiss-Prot
Match: OCS1_MAIZE (Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.335e-14
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1

Query:  535 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHCMNIESENSVLRAQLGELTHRLHSLNEII 774
            R+ KR +SNRESARRSR+RKQ+HLD+L+ +VA+L+ DN ++             +E EN+VLRA+  EL  RL S+NE++
Sbjct:   26 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVL 105

The following BLAST results are available for this feature:

BLAST of DY257820 vs. ExPASy Swiss-Prot

BLAST of DY257820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
OCS1_MAIZE	1.335e-14	48.75	Ocs element-binding factor 1 OS=Zea mays GN=OBF1 P...	[more]

Properties


Property Name	Value
Genbank description	KN0AAB1CF07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY257820 ID=DY257820; Name=DY257820; organism=Citrus clementina; type=EST; length=1236bp
GGGTGTTGGGTTTGTGTTCTTGAGCAAAAGTTTCAAATCCCAAAACACAA
ATCGCAGTTGGTTTTTTTGGGGAAGAACTAATGCTCAGTATATTGTTCTT
GATGTTTGAGATTCATGTCTCCAATTCTTGAACTTCTTTTTTCTGAGTGT
ATGATATATTCCACATTCAGGCGCAGGACCCAGCTTGTTCAATCTTTCTC
AGTTGTTTTCCTCTACTGGCTCTATTATGTTTCATGATTAATTTTTAGCT
TCATTTTTCAGTTATTAATAGTTAATTAGCCAATAAATCTGTAATCATCA
TCATCATCATCATCATTATTATCATCTGCATAATAAAATTTTCGGTTTTG
ATTTCATCTGGGTCCTGCAAAAATCTCTCTCTCTCTCTCTCAGTTTCCTC
TTATTGGAAAAGGGAAAAAAAGAATTGCAGTAATTTAAATGGCTTCTTCA
AGTGGGACATCATCAGGAGGATCGTCATCATTGATGTTGCAAAACTCAGG
GTCTGAGGAGAGTTTACAAGCATTGATGGATCAAAGGAAGAGGAAGAGGA
TGATATCGAACAGAGAATCAGCTAGAAGATCGAGGATGAGGAAGCAGAAG
CATTTGGATGATCTGATGGCTCAGGTTGCTCAGCTGAGGAAAGATAATCA
CCAGATCATCACCAGCATCAACATCGCGACGCAACATTGCATGAACATTG
AGTCTGAGAACTCAGTGTTGAGGGCCCAACTTGGTGAGCTCACTCACAGG
CTGCACTCGCTCAATGAAATCATCAGCTTCTTGGATGCCAGCAACAACAA
CGACGACGACGAAAACAATGGCGGTGCTGCCGCTGCTATCTTTGAAGCCA
CAAGCATGATCAACGAGCCTGCTTTCGATAATTTCATGAACCCACTGAAT
TTGTCATATCTGAATCAGCCTATCATGGGCTCCTGCAAACATGTTTCATC
AGTACTGATGCTGACCTCTTCTTTCTGAGAGATCAATCCTGAGAGGGGAT
TGTTTTGTCTTTATGTTTTTATTTGTTTGTTGCAGTGGTATTTAGGCTTT
TAATTAACCCTGTTGTAAAGGGATAAGGGATTTTATTAATGGGGGGTTTT
TCTTATGGGGTGGTTAAATTATTTTAAAATGGGGGGGGGGGGGGGGGGGG
GGGATATTTTTTTTATATTTTTTGTTTTTTTCAGGGCCCCCGAGGAGAAA
ATTAAAATTTTTTTGCCTCTCTGGGTTTTTTTTTTA