DY257831

Overview
NameDY257831
Unique NameDY257831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5063 contig Ccv1_Contig5063:334..995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.812e-32
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE--QPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRN 345
            VVIVD+SK+V H+GGS LA+PVE+VP+CWKFTA++L+ L E  GC A LR  GE  + FVTDNGNY+               SD ILRL GVVEHGMFLDMA+TVI+A ELGV I+N
Sbjct:  148 VVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLR-LGEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKN 263          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_BACSK (Ribose-5-phosphate isomerase A OS=Bacillus clausii (strain KSM-K16) GN=rpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGV 333
            VV+ DESKLV  LG     +PVE++P+ W+ TA R++ L    G VA LR TG+ PFV+DN N++             +  + + +L GVVE G+FLDMA   IVAS+ G+
Sbjct:  114 VVLADESKLVEELGA--FKLPVEIIPFGWETTAMRIEAL----GGVASLRQTGKSPFVSDNHNWILDCDFGNIRDPYSL-HEKVKKLVGVVETGLFLDMACEAIVASKNGI 217          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA1_OCEIH (Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus iheyensis GN=rpiA1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIR 342
            V+IVD+SK+V  LG    ++PVEV+P+ W+ TA  +  L    GCV  +R   E+P VTDNGNY+             + +  I  + GV+E G+F+DMATTVIV  +  + I+
Sbjct:  118 VIIVDQSKVVETLGE--FSLPVEVLPFSWQRTANEISKL----GCVPTVRVHEEEPLVTDNGNYILDCPFKVIPHPDKL-NKEIKSIVGVIETGLFIDMATTVIVGEKDNIYIK 224          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_BACWK (Ribose-5-phosphate isomerase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGV 333
            ++I DESKLV HLG     +P+E++ + WK T KR+Q L    GC   LR    +PF+TDNGN +                  +  + GVVE G+F++M +  I+ ++ G+
Sbjct:  114 IIIADESKLVSHLGT--FPLPIEIISFSWKQTEKRIQSL----GCETHLRMKDSRPFITDNGNLIIDCIFPNKILNPNDTHTELKMITGVVETGLFINMKSKAIIGTKNGI 218          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_BACCR (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 36/111 (32.43%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGV 333
            ++I DESKLV HLG     +P+E++P+ WK T  ++Q L    GC   LR    + ++TDN N +                  +  + GVVE G+F+ M +T I+ ++ G+
Sbjct:  113 IIIADESKLVTHLGT--FPLPIEIIPFSWKQTENKIQSL----GCQTTLRLKNNETYITDNNNMIIDCIFPNHISNPVHLHTQLKMITGVVETGLFISMTSTAIIGTKNGI 217          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_THERP (Ribose-5-phosphate isomerase A OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 339
            V+I+D+SKLV  LG     +PVEVVP+ W++ A+ L+DL        + R TG  PF +DNGN +             +    I  L GV++HG+FLDMA  VIV SE G+ +
Sbjct:  117 VIIIDDSKLVAALGAR-FPLPVEVVPFGWRWCARWLEDL--GGRPTLRCRPTGH-PFRSDNGNLILDVAFGAIADPAWL-DRTIKMLPGVIDHGLFLDMADLVIVGSETGIRL 224          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_BACC1 (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987) GN=rpiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGV 333
            ++I DESKLV HLG     +PVE++P+ WK T  ++Q L    GC   LR    + F+TDN N +                +++  + GVVE G+F++M +  I+ ++ G+
Sbjct:  113 LIIADESKLVTHLGT--FPLPVEIIPFSWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIIDCVFPHNITNPANLHNHLKMITGVVETGLFVNMTSKAIIGTKNGI 217          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_GLOVI (Ribose-5-phosphate isomerase A OS=Gloeobacter violaceus GN=rpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGVTI 339
            ++IVD +KLV  LG  G  +PVEV P+ W+ TA+ L+ L    G    LR    Q F+TD G+Y+             + +  I R+ GVVE G+F+ MA+ VIVA E G+ +
Sbjct:  117 IIIVDATKLVEQLGSHG-PLPVEVAPFGWQATARALERL----GAEVNLRAQHGQAFLTDGGHYILDCRFGPIARPAELEAA-IDRIPGVVESGLFVGMASAVIVADEGGIEV 223          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_STAES (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRN 345
            VV+VDESKLV +LG +  A+PVEV  + W   AK+++  ++        R   + PF+TDNGNY+             +  + ++ L GV+E G FLD+A  VIV ++ GV I N
Sbjct:  118 VVVVDESKLVNYLGET-FALPVEVDKFNWYQVAKKIERTYD---IHVSRRVNEDVPFITDNGNYILDCSLQNRIPAYEL-HEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILN 227          
BLAST of DY257831 vs. ExPASy Swiss-Prot
Match: RPIA_STAEQ (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRN 345
            VV+VDESKLV +LG +  A+PVEV  + W   AK+++  ++        R   + PF+TDNGNY+             +  + ++ L GV+E G FLD+A  VIV ++ GV I N
Sbjct:  118 VVVVDESKLVNYLGET-FALPVEVDKFNWYQVAKKIERTYD---IHVSRRVNEDVPFITDNGNYILDCSLQNRIPAYEL-HEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILN 227          
The following BLAST results are available for this feature:
BLAST of DY257831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RPIA_ARATH7.812e-3260.68Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
RPIA_BACSK1.748e-1543.24Ribose-5-phosphate isomerase A OS=Bacillus clausii... [more]
RPIA1_OCEIH6.644e-1540.35Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus... [more]
RPIA_BACWK9.594e-1435.14Ribose-5-phosphate isomerase A OS=Bacillus weihens... [more]
RPIA_BACCR1.385e-1232.43Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_THERP1.809e-1240.71Ribose-5-phosphate isomerase A OS=Thermomicrobium ... [more]
RPIA_BACC11.809e-1233.33Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_GLOVI5.264e-1238.94Ribose-5-phosphate isomerase A OS=Gloeobacter viol... [more]
RPIA_STAES6.875e-1238.26Ribose-5-phosphate isomerase A OS=Staphylococcus e... [more]
RPIA_STAEQ6.875e-1238.26Ribose-5-phosphate isomerase A OS=Staphylococcus e... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257831 ID=DY257831; Name=DY257831; organism=Citrus clementina; type=EST; length=663bp
GTTGTTATTGTCGACGAGTCCAAGCTGGTGCCTCATCTCGGAGGGAGCGG
CCTGGCCATGCCCGTTGAAGTGGTGCCGTACTGTTGGAAGTTTACGGCCA
AGAGGCTTCAGGATTTGTTTGAGGATTGTGGCTGTGTTGCCAAGCTCAGA
ACCACCGGTGAGCAGCCGTTTGTCACCGATAATGGCAACTACGTTATTGA
TTTGTATTTGAAGAAAGACATTGACGATTTGAAAGTTGCAAGCGACAACA
TTTTGCGGCTTGCCGGTGTTGTTGAGCACGGGATGTTTCTTGATATGGCT
ACTACTGTGATTGTAGCAAGCGAACTCGGCGTTACAATTAGGAATAAATA
GTGATTTTTTTTAAAATTTTTAATTTTTAACGTGTCGAGTCTAATTCCCA
AGTGAATTTGGGCACATTGTCATTGTTATACAAACACAAAAAAGGGATTT
TTGGGTCCATTTTTTAAGAAACTGATGAATTCTCCTGTATTAGGAGGTAC
TTCCAAGTTTTGTTTGAGACAGGTATTAGAGGATTTTAGGCGATTCTGAA
GATAACTGAAGGATGAGTGAAGAATGGTGTATCACAGTTATCATTTTCTT
TTCAATAGTTATTTCCATGTTATATTTATTAACGCTTTGGAATTGACTTG
GTCAGAATTGATA
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