DY257836

Overview
NameDY257836
Unique NameDY257836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257836 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 1.573e-82
Identity = 171/335 (51.04%), Postives = 205/335 (61.19%), Query Frame = 1
Query:   43 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGIAAAF*RPILMVIVRISGQCLKTPSLLR*SLMRLEFHPRSSWQSFNH 1038
            M A+ DSKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK  C NG + RDPM RCV+GI  AF +           Q LK PS     L  +E+   SS  +  H
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTH 326          
BLAST of DY257836 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 1.332e-81
Identity = 169/335 (50.45%), Postives = 204/335 (60.90%), Query Frame = 1
Query:   43 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGIAAAF*RPILMVIVRISGQCLKTPSLLR*SLMRLEFHPRSSWQSFNH 1038
            M A+ D+KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK  C NG + RDPM RCV+GI  AF +           Q LK PS     L  +E+   SS  +  H
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTTH 326          
BLAST of DY257836 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.561e-56
Identity = 118/247 (47.77%), Postives = 155/247 (62.75%), Query Frame = 1
Query:  181 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGIAAAF 912
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+LDD+  G   + ++  +C NG++ +  M   V GI  AF
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAF 284          

HSP 2 Score: 22.3274 bits (46), Expect = 9.561e-56
Identity = 13/37 (35.14%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  909 FLKAYFDGDCEDFRTMFEDPFSAPIELDEVGVSSPQL 1019
            FLK    G+  + R + +DP  +P +LD     SP+L
Sbjct:  284 FLKYSLWGEKAEIRLIVKDPSVSPAKLD----PSPEL 316          
BLAST of DY257836 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.460e-44
Identity = 104/252 (41.27%), Postives = 143/252 (56.75%), Query Frame = 1
Query:  181 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGIAAAF 912
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D+LDD+ +G +  + S  LC NG++ R PM R V G+  +F
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFREC-QGPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGLVVSF 284          
BLAST of DY257836 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 6.685e-41
Identity = 105/277 (37.91%), Postives = 150/277 (54.15%), Query Frame = 1
Query:  106 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMXRCVAGIAAAF 912
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG+ +N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP                 CAP + +H+QF+  C   + +HF    YGHMD+L++    P    +S L+C    +P+  M R + GI  AF
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNH---TISCAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAF 303          
The following BLAST results are available for this feature:
BLAST of DY257836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN1.573e-8251.04Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI1.332e-8150.45Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH9.561e-5647.77Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH6.460e-4441.27Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL6.685e-4137.91Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1DA08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257836 ID=DY257836; Name=DY257836; organism=Citrus clementina; type=EST; length=1283bp
GCGGGGGTGCACAAACTCAACACACAAACAATTTAGACTACAATGACAGC
AGTAGCCGATAGCAAGCCCGTCTCCGTTGAAGCTAAGCCTGGTTTGGCAA
CGGCCTTACTATCAGTTTTTTCAAGTGGACCTTATTCCCCGAAACTCAAG
ACAGTGAATAAACCATGGTTTAATAGTTTTCCTCCAAAGCCGTTGAATAT
TGTTTATCCAGAAGAAAAAGGAACATATGAAGTTATTTTGTTTTTCCACG
GCACTGCTCTCAGCAACACAAGCTATTCCAATCTCTTAGACCACTTGGCT
TCCCATGGATACATCGTTGTTGCCCCTCAGTTATACGATTTTCTGCCGCC
GAAAGGAAACGGAGAAGTTAACGATGCAGCAAACGTCCTCAACTGGTTAT
CAACAGGCCTTCAATCAGAACTCCCGGAAAATGTTGAAGCTAACCTAAAC
TACGTTGCTCTTATGGGACACAGTCGCGGAGGACTAATAGCGTTCGGTCT
GGCACTTGGCTATGCAACAAATCCTCCAGTTAGCATTAAAATTTCAGCAT
TAGTAGGCATAGACCCAGTTGCGGGGTTAGCCAGCGTTCATAGTGAACTT
GAACCCCCGATTCTCAGTCATGACTCATTCGAGTTCTCAATTCCTGTTAC
TGTAATTGGCACCGGACTCGGTGGTGTGACAAAGTGCATGCAGCCTTGTG
CACCGGAAAACAAAAACCATGAGCAATTTTTCAAGAGGTGTACATATTCA
GATCATGCTCATTTTGATGCTAAGGATTATGGTCACATGGACATTTTAGA
TGATAATCCCCAGGGACCAAAGAATTGGGCAATTTCAAAACTTTTGTGCA
CGAATGGAAAGAAACCAAGGGATCCCATGANGAGATGTGTTGCTGGCATT
GCTGCGGCTTTTTGAAGGCCTATTTTGATGGTGATTGTGAGGATTTCAGG
ACAATGTTTGAAGACCCCTTCTCTGCTCCGATAGAGCTTGATGAGGTTGG
AGTTTCATCCCCGCAGCTCGTGGCAAAGCTTTAACCACTGCACCTACCCA
TTTGACTCAAATGCACTTTCCATTTTTTGGGAGGGAAACTTTCCAGAAAT
GGAAGGGAAAAGCTTAAAAAAACCTAAAAAAATAAAAAAAAAACGGGAAA
AAAAAGGAACCCTGGTTTTTAGGAAAAACCTTTTTAAAAAAAAAGGAATT
CGGGGTGTTTTTATATTTAGGGGTTTTTGTTGGGTTTTTTTTTTTTTTTG
CCCCCCAGTTTTTTTTTTTCTTTCACAAATTTT
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