DY257970

Overview
NameDY257970
Unique NameDY257970
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig279 contig Ccv1_Contig279:224..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257970 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.854e-18
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1
Query:    1 DFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 147
            DFIHE +++ES +SAVCERVL+RCLAPST GGEGCDNMTMI+VQFKKPI
Sbjct:  285 DFIHEHINTESSLSAVCERVLDRCLAPSTLGGEGCDNMTMILVQFKKPI 333          
BLAST of DY257970 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.358e-18
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    1 DFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 147
            DFIHE +  ES +SAVCERVL+RCLAPST GGEGCDNMTM++VQFKKPI
Sbjct:  285 DFIHEHIQKESSLSAVCERVLDRCLAPSTIGGEGCDNMTMVLVQFKKPI 333          
BLAST of DY257970 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.155e-17
Identity = 37/48 (77.08%), Postives = 46/48 (95.83%), Query Frame = 1
Query:    1 DFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 144
            DFIHEQL+SE+K+S VCE+VL+RCLAP+T+GGEGCDNMTMI+V+FK P
Sbjct:  285 DFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILVRFKNP 332          
BLAST of DY257970 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.566e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 DFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 144
            DFIHEQL SE+K+S VCE+V++RCLAP TA GEGCDNMT+I+VQFKKP
Sbjct:  285 DFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTIILVQFKKP 332          
BLAST of DY257970 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.792e-12
Identity = 29/48 (60.42%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 DFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 144
            DF+H+++++E  +SAVCE++L+ CLAP  +GG+GCDNMT+IIV+FKKP
Sbjct:  284 DFVHKEMNTEDSLSAVCEKLLDHCLAP-VSGGDGCDNMTVIIVKFKKP 330          
The following BLAST results are available for this feature:
BLAST of DY257970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
P2C58_ORYSJ2.854e-1881.63Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ6.358e-1879.59Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C60_ARATH3.155e-1777.08Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C21_ARATH1.566e-1677.08Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C70_ORYSJ1.792e-1260.42Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2BF10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257970 ID=DY257970; Name=DY257970; organism=Citrus clementina; type=EST; length=410bp
GATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTGCTGTGTG
CGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGAGGTGAGG
GATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACCAATCCAG
TCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAATCAGATGA
CTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAGCCGCTGTAATGTA
CCACTATGTCAGGCTGCACGATTCTGGTTCCTTTGCCCATAAGACAATGC
AAGAATCCCTTTCGTTGAAAAATTGGGATCAAAGACGTGTGTACTTGTAG
ATGGTCCAGCACTGAGAAAAAAGAAAAAAATAAATGAAATGTTTACAAAA
TTCATTTGTT
back to top