DY257976

Overview
NameDY257976
Unique NameDY257976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5944 contig Ccv1_Contig5944:691..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257976 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.204e-39
Identity = 81/104 (77.88%), Postives = 83/104 (79.81%), Query Frame = 2
Query:    5 NYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 316
            NYR                WTDGLTL RFD HSKTNEQTVQEML+LA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV+F
Sbjct:  205 NYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 308          
BLAST of DY257976 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.586e-25
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 2
Query:    5 NYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 316
            NYR                W +GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEHV  LM+SNIVQ L  MLDTV+F
Sbjct:  206 NYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309          
BLAST of DY257976 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.586e-25
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 2
Query:    5 NYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 316
            NYR                W +GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEHV  LM+SNIVQ L  MLDTV+F
Sbjct:  206 NYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309          
BLAST of DY257976 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.228e-23
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 2
Query:    5 NYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 316
            NYR                W DGLTL  ++ H   NE TV EML+LA  YNK++++E+++ PE+LAI NVG+QD K+HLEE V  +M +NIVQ LG MLDT++F
Sbjct:  204 NYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGAMLDTIVF 307          
BLAST of DY257976 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.924e-17
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 2
Query:    5 NYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 316
            NYR                WT+GL + +FD H ++NE+ +  +L L  +Y K++Q+ED++ PEK  ++ VG+ D K+HL   V  LM++N+V+ L  MLDTV F
Sbjct:  203 NYRKNELEQKMLLNLHKKKWTEGLIVDKFDTHEQSNEKQINNLLELTKQYQKSIQDEDKIEPEKKEVSAVGKLDPKRHLISDVHTLMANNVVRVLTVMLDTVTF 306          
BLAST of DY257976 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 7.083e-12
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 2
Query:   62 WTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 316
            W  GL L  F+  ++ N  ++ +M +L+ +Y + VQ E  L PE+L I  VG+QD KKHL+  V   + +NI   L  MLD+V F
Sbjct:  224 WAHGLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLACMLDSVAF 308          
BLAST of DY257976 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.061e-11
Identity = 29/82 (35.37%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   62 WTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 307
            W D +++  +    + N++ ++ ML LA  Y KA+++E  +  ++LAI NVG+ D K+H+ + VS +++ NIVQ+L  M+ T
Sbjct:  227 WMDAVSVENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELAIKNVGKMDPKRHIADEVSKMLNDNIVQSLAGMMAT 308          
The following BLAST results are available for this feature:
BLAST of DY257976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSDE_ARATH5.204e-3977.8826S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE5.586e-2554.8126S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN5.586e-2554.8126S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME5.228e-2349.0426S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DICDI1.924e-1738.4626S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_SCHPO7.083e-1240.0026S proteasome regulatory subunit rpn11 OS=Schizos... [more]
PSDE_CAEEL2.061e-1135.3726S proteasome non-ATPase regulatory subunit 14 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BG05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257976 ID=DY257976; Name=DY257976; organism=Citrus clementina; type=EST; length=429bp
CGGGAATTACAGGAAGAATGAACTTGAAGAAAAGATGCTACTAAATCTGC
ACAAGAAGAAATGGACTGATGGATTAACACTTCATCGCTTTGATTGCCAT
TCCAAAACCAATGAACAGACTGTCCAGGAGATGTTAAATTTGGCTGTCAA
ATATAACAAGGCAGTTCAAGAAGAAGACGAGCTGCCGCCAGAGAAGCTGG
CCATTGCTAATGTGGGAAGGCAAGATGCAAAGAAGCACCTTGAGGAACAT
GTCTCCAACTTGATGTCCTCAAACATAGTTCAAACTTTGGGAACCATGCT
TGATACAGTCATATTCTAGATGTTGGTTTGTTTTCTGTAGTTTCACTAGC
TTCACTCTTGTTTGACTATTTGTATGGCATTTACAGTTTGAATTTGTGCT
TTATAATTTAACATTTTAATTCTGAAGGC
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