DY258028

Overview
NameDY258028
Unique NameDY258028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.049e-48
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 400
            MARIKVHELRQK+K +               RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYAIKV
Sbjct:    1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.984e-48
Identity = 101/123 (82.11%), Postives = 105/123 (85.37%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 400
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.796e-48
Identity = 101/123 (82.11%), Postives = 104/123 (84.55%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 400
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.373e-47
Identity = 100/123 (81.30%), Postives = 104/123 (84.55%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 400
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.282e-46
Identity = 99/123 (80.49%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 400
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 8.917e-32
Identity = 70/122 (57.38%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 397
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.917e-32
Identity = 70/122 (57.38%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 397
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 397
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 70/122 (57.38%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 397
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYAIK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122          
BLAST of DY258028 vs. ExPASy Swiss-Prot
Match: RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   32 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 397
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
The following BLAST results are available for this feature:
BLAST of DY258028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES1.049e-4882.9360S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL352_ARATH3.984e-4882.1160S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL354_ARATH6.796e-4882.1160S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH3.373e-4781.3060S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH1.282e-4680.4960S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT8.917e-3257.3860S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE8.917e-3257.3860S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_HUMAN2.595e-3156.5660S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
RL35_CHICK2.595e-3157.3860S ribosomal protein L35 OS=Gallus gallus GN=RPL3... [more]
RL35_BOVIN2.595e-3156.5660S ribosomal protein L35 OS=Bos taurus GN=RPL35 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CG08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258028 ID=DY258028; Name=DY258028; organism=Citrus clementina; type=EST; length=619bp
GGTTGCAGGAGCAGAGACACCAAACGTAGCAATGGCTAGGATCAAGGTGC
ATGAGCTGAGGCAGAAATCGAAGGTGGATCTTTTGAACCAGTTGAAGGAA
CTCAAGGCTGAGCTCGCCCTCCTTCGCGTTGCTAAGGTCACCGGCGGTGC
CCCTAACAAGCTATCCAAGATCAAGGTGGTGAGGTTATCGATCGCACAAG
TGTTGACTGTCATTTCACAAAAGCAGAAGGCTGCATTGAGGGAGGCATAC
AAGAATAAGAAGTTCTTGCCCCTTGATCTGCGTCCCAAGAAGACCCGGGC
TATCAGGAGAAGGCTTACCAAGCACCAGGCTTCACTGAAGACCGAGCGGG
AGAAGAAGAGGGAGATGTACTTTCCCATGAGGAAGTACGCCATTAAGGTG
TAGGCTAGAATCTTTTTCTAGGAGTATCTTGGTATCTTGCAGTTACGAAC
CTATTTTGTTGACAAATTTTTACTTTTGTTACCTTTTCAAATATCATTTT
TGTTCACTTAAATTTGCTTTTGTTCAATCTTATGTGTGTAAAACTTGAAG
GGTGCATCTCAACCTAAACAAGATGTGCTAGATTGTGATGGAATAGCAGT
CAAGATAGGATTTCTGTTC
back to top