DY258125

Overview
NameDY258125
Unique NameDY258125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1354
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9968 contig Ccv1_Contig9968:4..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 462.225 bits (1188), Expect = 3.144e-129
Identity = 223/372 (59.95%), Postives = 279/372 (75.00%), Query Frame = 3
Query:    6 FMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNGLTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGE---AQKQAYDPIT*LQSKIITPKNCPSR*KGFNSQKNGK 1112
            FMTHATKAIY+ LL+DYV VS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF + +H  +++GGR LIP +ALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q   +NPF FKHIS L S+D   D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N  +I GY VEGTLAK I+SEP+E+T M+G   PL M   YISFSAH DY QTS F++ L  P++ILVHGE +E      A  + Y+    +  ++  P+N  +    F  +K  K
Sbjct:   94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 465          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1)

HSP 1 Score: 462.225 bits (1188), Expect = 3.144e-129
Identity = 223/372 (59.95%), Postives = 279/372 (75.00%), Query Frame = 3
Query:    6 FMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNGLTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGE---AQKQAYDPIT*LQSKIITPKNCPSR*KGFNSQKNGK 1112
            FMTHATKAIY+ LL+DYV VS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF + +H  +++GGR LIP +ALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q   +NPF FKHIS L S+D   D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N  +I GY VEGTLAK I+SEP+E+T M+G   PL M   YISFSAH DY QTS F++ L  P++ILVHGE +E      A  + Y+    +  ++  P+N  +    F  +K  K
Sbjct:   94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 465          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1)

HSP 1 Score: 459.914 bits (1182), Expect = 1.561e-128
Identity = 222/372 (59.68%), Postives = 278/372 (74.73%), Query Frame = 3
Query:    6 FMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNGLTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGE---AQKQAYDPIT*LQSKIITPKNCPSR*KGFNSQKNGK 1112
            FMTHATKAIY+ LL+DYV VS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PDI IIESTYG  +H+ R  RE RF   +H  +++GGR LIP +ALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q   +NPF FKHIS L S+D   D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N  +I GY VEGTLAK I+SEP+E+T M+G   PL M   YISFSAH DY QTS F++ L  P++ILVHGE +E      A  + Y+    +  ++  P+N  +    F  +K  K
Sbjct:   94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 465          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 432.565 bits (1111), Expect = 2.668e-120
Identity = 210/371 (56.60%), Postives = 275/371 (74.12%), Query Frame = 3
Query:    3 VFMTHATKAIYKLLLTDYVLVSKVSVED-MLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNGLTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGEAQKQAYDPIT*LQSKIITPKNCPSR*KGFNSQKNGK 1112
            VFMTH TKAIY +LL+DYV VS ++ +D MLFD+ D++RS+++IE + + Q VE NGIK  C+ AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL  AE P    D+ IIESTYGVQ+H+PR  RE+RFT  +H  + + G+ LIP +ALGRAQELLLILDEYW  +P+ H++PIYYAS LAKKCM VY+TYI  MN+R+R QF  SNPF+FKHI  +  I+   D GP V MASPG LQSGLSRQLF+ WCSDK+N  VIPGY VEGTLAK I+SEP E+T ++ +  PLN+   Y+SFSAH+D+ QTS F++E+  P+++LVHG+++E    ++        +   ++TPKN  S    F  +K  K
Sbjct:  119 VFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVIPGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEFIQEIQPPHVVLVHGDANEMSRLRQSLVAKFKTI--NVLTPKNAMSVALEFRPEKVAK 487          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 5.044e-111
Identity = 199/374 (53.21%), Postives = 261/374 (69.79%), Query Frame = 3
Query:    3 VFMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNGLTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESH--EKGEAQKQAYDPIT*LQSKIITPKNCPSR*KGFNSQKNGK 1112
            V+MTH TKA+Y+ L++D+V +S    +D LFDE ++  S  +IE +DFHQ V +  G++F  Y AGHVLGA MF+++IAG+R+LYTGD+SREEDRHL  AE+P   PD+ I ESTYG Q H+PR  +E RFT  IH  I +GGRVL+P + LGRAQELLL+LDEYW+ HPE H++PIYYAS LAKKC++VYQTYI +MN+ IR +F    NPF FKHIS L S++   D GP V+MASPG +QSG+SR+L + W  DK+N  ++ GY VEGT+A+ I++EP E+  +NG   P  M   YISFSAH D+AQ S F+ E+ A +I+LVHGE +   K  A  QA         KI TP+NC      F +Q+  K
Sbjct:  108 VYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDENEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHIRTRFNRRDNPFVFKHISNLRSLEKFEDRGPCVMMASPGFMQSGVSRELLERWAPDKRNGLIVSGYSVEGTMARNILNEPDEIIGINGQKIPRRMSVDYISFSAHVDFAQNSRFIDEIKAQHIVLVHGEQNNMSKLRAALQARFTARGSDVKIHTPRNCEPLVLQFRAQRTAK 481          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 5.219e-108
Identity = 190/358 (53.07%), Postives = 249/358 (69.55%), Query Frame = 3
Query:    3 VFMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNGLTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGEAQKQAYDPI--T*LQSKIITPKNC 1070
            VFMTH TKA+ K LL+DYV VS V +ED L+DE+D+  + DRIE +D+H T+EV GIKF  Y AGHVLGA M+ V++AGV +L+TGDYSREEDRHL  AE+P   PD+ I ESTYG   HQPR  +E R  ++IHSTI  GGRVL+P +ALGRAQELLLILDEYW+NH +  ++PIYYAS LA+KCMA++QTY+  MN+ IR  FA  NPF F+ +  L +++   D+GPSV++ASPG LQ+G+SR L + W  D +N  ++ GY VEGT+AK I +EP E+  ++G   P  M    +SF+AH DY Q S F+  + A +IILVHGE    G  +           +  K+ TP+NC
Sbjct:  118 VFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEGTMAKQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQNSEFIDLVNADHIILVHGEQTNMGRLKSALASKFHNRKVDVKVYTPRNC 475          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: YSH1_ASHGO (Endoribonuclease YSH1 OS=Ashbya gossypii GN=YSH1 PE=3 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 3.501e-104
Identity = 188/375 (50.13%), Postives = 265/375 (70.67%), Query Frame = 3
Query:    3 VFMTHATKAIYKLLLTDYVLVSKVS-------VEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNG--LTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGEAQKQAYDPIT*LQS-----KIITPKNC 1070
            VFMTH TKAIY+ LL+D+V V+ +         ++ L+ ++D+  S DRIE +D+H T++VNGIKF  Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL +AE+P    DI I+EST+G   H+PR  +E++ T +IH+T+S+GGRVL+P +ALGRAQE++LILDEYWS H E      +PI+YAS LA+KCM+V+QTY+  MN++IR +F +S  NPF FK+IS L ++D+  D GPSV++ASPG LQ+GLSR L + WC D+KN  +I GY VEGT+AK ++ EP+ +  +N   ++ P   Q   ISF+AH D+ +   F++++ APNIILVHGES+  G  +       + L+      ++  P+NC
Sbjct:   92 VFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLAESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMNDKIRKKFRDSQTNPFIFKNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPDEKNLVLITGYSVEGTMAKFLMLEPETIPSINNSDVSIPRRCQVEEISFAAHVDFRENLEFVEKIGAPNIILVHGESNPMGRLKSALLSNFSSLKGTEDEVRVYNPRNC 466          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: YSH1_KLULA (Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 1.471e-102
Identity = 188/375 (50.13%), Postives = 260/375 (69.33%), Query Frame = 3
Query:    3 VFMTHATKAIYKLLLTDYVLVSKV-------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNG--LTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGEAQKQAYDPIT*LQS-----KIITPKNC 1070
            VFMTH TKAIY+ LL D+V V+ +       S  D L+ ++D+  S DRIE +D+H T+EVNGIKF  + AGHVLGAAMF ++IAGVRVL+TGDYSRE DRHL +AE+P  S D+ I+EST+G   H+PR  RER+ T +IH+ +S+GGRVL+P +ALGRAQE++LILDEYW NH E      +PI+YAS LAKKCM+V+QTY+  MN+ IR +F +S  NPF FK+IS L ++D+  D GPSV++ASPG LQ+GLSR + + WC ++KN  ++ GY VEGT+AK ++ EP+ +  ++   +T P   Q   I+F+AH D+ +   F++ + A NIILVHGES+  G  +       + L+       +  P+NC
Sbjct:   95 VFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASNIILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNC 469          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: YSH1_YEAST (Endoribonuclease YSH1 OS=Saccharomyces cerevisiae GN=YSH1 PE=1 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 1.921e-102
Identity = 189/376 (50.27%), Postives = 260/376 (69.15%), Query Frame = 3
Query:    3 VFMTHATKAIYKLLLTDYVLVSKV--------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNG--LTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGEAQKQAYDPIT*LQS-----KIITPKNC 1070
            VFMTH TKAIY+ LL D+V V+ +        + ++ LF ++D+  S D+IE +D+H TV+VNGIKF  + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P  S ++ I+EST+G   H+PR  RER+ T +IHST+ +GGRVL+P +ALGRAQE++LILDEYWS H +      +PI+YAS LAKKCM+V+QTY+  MN+ IR +F +S  NPF FK+IS L +++D  D GPSV++ASPG LQSGLSR L + WC + KN  +I GY +EGT+AK I+ EP  +  +N   +T P   Q   ISF+AH D+ +   F++++ APNIILVHGE++  G  +         L+       +  P+NC
Sbjct:   90 VFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRNC 465          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: YSH1_YARLI (Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YSH1 PE=3 SV=2)

HSP 1 Score: 363.999 bits (933), Expect = 1.165e-99
Identity = 187/380 (49.21%), Postives = 248/380 (65.26%), Query Frame = 3
Query:    3 VFMTHATKAIYKLLLTDYVLVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN--SNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNG--LTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGESHEKGEAQKQAYDPIT*LQSK-----IITPKNCPSR*KGFNSQKNGK 1112
            VFMTH TK IY+ LL+D+V V+  +  D  L+ E D+  S ++IE +D+H T+EVNG+KF  Y AGHVLGAAM+ +++ GV+VL+TGDYSREEDRHL  AE+P   PDI I ESTYG   H PR  RE+R T +IHST+ +GG+ L+P +ALGRAQE+LLILDEYW  HP+     IYYAS LAKKC+AVYQTYI  MN+ IR +F +  +NPF+FK+I  + ++D   D+GP V++ASPG LQSG+SR L + W  D KN  ++ GY VEGT+AK II+EP E+       L  P  +    +SF+AH D+ Q S F+  + + NIILVHGE +     +         L++      I  P+NC      F   K  K
Sbjct:  118 VFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALGRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRRFRDQKTNPFRFKYIKNIKNLDRFDDMGPCVMVASPGMLQSGVSRSLLERWAPDPKNTLILTGYSVEGTMAKQIINEPNEIPSAQNPDLKVPRRLAVEELSFAAHVDFQQNSEFIDLVDSKNIILVHGELNNMQRLKAALLAKYRGLKNSPREKTIYNPRNCEEVELAFKGVKVAK 497          
The following BLAST results are available for this feature:
BLAST of DY258125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CPSF3_HUMAN3.144e-12959.95Cleavage and polyadenylation specificity factor su... [more]
CPSF3_BOVIN3.144e-12959.95Cleavage and polyadenylation specificity factor su... [more]
CPSF3_MOUSE1.561e-12859.68Cleavage and polyadenylation specificity factor su... [more]
CPSF3_DICDI2.668e-12056.60Cleavage and polyadenylation specificity factor su... [more]
YSH1_USTMA5.044e-11153.21Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 P... [more]
YSH1_SCHPO5.219e-10853.07Endoribonuclease ysh1 OS=Schizosaccharomyces pombe... [more]
YSH1_ASHGO3.501e-10450.13Endoribonuclease YSH1 OS=Ashbya gossypii GN=YSH1 P... [more]
YSH1_KLULA1.471e-10250.13Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=Y... [more]
YSH1_YEAST1.921e-10250.27Endoribonuclease YSH1 OS=Saccharomyces cerevisiae ... [more]
YSH1_YARLI1.165e-9949.21Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AF08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258125 ID=DY258125; Name=DY258125; organism=Citrus clementina; type=EST; length=1354bp
GGGTATTTATGACTCATGCTACAAAGGCTATTTACAAGTTGCTTTTGACT
GATTATGTATTAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTTCGATGA
ACAAGACATTAATCGCTCCATGGATAGAATTGAGGTTCTTGATTTCCATC
AGACAGTGGAAGTGAATGGCATTAAATTCTGGTGTTATACCGCTGGCCAT
GTCCTGGGTGCTGCCATGTTTATGGTTGACATTGCTGGTGTTCGAGTACT
CTACACTGGAGATTATTCTCGTGAAGAAGACCGACATCTCCGTGCTGCTG
AGCTTCCTCAGTTCTCTCCTGACATTTGTATAATCGAATCCACTTATGGT
GTTCAGCTTCATCAACCACGGAACATTCGTGAGAGGCGCTTCACTGATGT
TATTCACTCAACTATTTCTCAAGGAGGTCGTGTTCTAATTCCGGCATATG
CCCTTGGCCGAGCCCAGGAGCTGCTGCTGATCCTTGATGAGTACTGGTCG
AACCATCCGGAGTTCCATAATATTCCAATTTATTATGCTTCTCCACTTGC
CAAAAAGTGCATGGCTGTTTATCAGACATACATCCTTTCCATGAATGAGA
GAATCCGCAACCAGTTTGCAAACTCAAATCCCTTCAAATTCAAGCACATT
TCGCCATTAAATAGCATTGATGACTTAAGTGATGTTGGCCCTTCAGTGGT
GATGGCAAGCCCGGGTGGGCTACAGAGTGGTTTGTCTAGACAATTATTTG
ATATTTGGTGCTCTGATAAGAAAAATGCTTGTGTCATACCAGGTTATCTT
GTTGAAGGAACATTGGCAAAAACCATAATTAGTGAACCAAAAGAAGTCAC
CCTTATGAATGGGCTCACCGCTCCTCTCAACATGCAGGGTCATTACATAT
CTTTCTCTGCACACGCAGACTATGCTCAGACAAGCACATTTTTAAAAGAG
CTCATGGCTCCTAACATAATTCTTGTTCATGGAGAATCTCATGAAAAGGG
GGAGGCTCAAAAACAAGCATATGACCCAATTACCTGACTGCAATCCAAAA
TTATAACCCCCAAGAACTGTCCGTCCCGTTGAAAGGGATTTAACTCCCAA
AAAAATGGAAAAAACCATTGGGAAGGGTGGGTGAAAAAAAGGCCCGAAAT
TTGGGGAAAAATGTCCCTGGGGCAATTTTTTTTAAAACAGGGGTTTCACT
TTTCCCAAAAAAAGGGGGCTCCCGGAGATAATTTTTCCACACCCTTTCCC
CCCCCCTTTTTATCAACACAAAAAAAAATATATCCCCAAAAAGAAATAAT
TACTACTCTCCCCCGCGCCTCCCACGGGCGCGGCCCCCCTTCTGGGTGTT
GGGG
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