DY258126

Overview
NameDY258126
Unique NameDY258126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1339
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258126_ssr393 microsatellite DY258126_ssr393:393..404. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9969 contig Ccv1_Contig9969:4..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258126 vs. ExPASy Swiss-Prot
Match: RBM25_HUMAN (RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3)

HSP 1 Score: 55.4546 bits (132), Expect = 2.063e-16
Identity = 24/65 (36.92%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  869 KEITEFLGEEETTLVDYIVISTPDHVKASQMLELLQTILNHEAEMFVLKKWKMVIF*NQKGKKGL 1063
            K+I E++GEEE TLVD++      H     +L+ +  +L+ EAE+F++K W+++I+  +  K GL
Sbjct:  777 KKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 841          

HSP 2 Score: 52.373 bits (124), Expect = 2.063e-16
Identity = 28/82 (34.15%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  636 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKRL 878
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+K++
Sbjct:  700 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKI 779          
BLAST of DY258126 vs. ExPASy Swiss-Prot
Match: RBM25_MOUSE (RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.063e-16
Identity = 24/65 (36.92%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  869 KEITEFLGEEETTLVDYIVISTPDHVKASQMLELLQTILNHEAEMFVLKKWKMVIF*NQKGKKGL 1063
            K+I E++GEEE TLVD++      H     +L+ +  +L+ EAE+F++K W+++I+  +  K GL
Sbjct:  775 KKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 839          

HSP 2 Score: 52.373 bits (124), Expect = 2.063e-16
Identity = 28/82 (34.15%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  636 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKRL 878
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+K++
Sbjct:  698 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKI 777          
The following BLAST results are available for this feature:
BLAST of DY258126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBM25_HUMAN2.063e-1636.92RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE... [more]
RBM25_MOUSE2.063e-1636.92RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AF09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258126 ID=DY258126; Name=DY258126; organism=Citrus clementina; type=EST; length=1339bp
GGGAAAAGGAGGAGGACTTGGCAGACGAAGTAAGGGAAGAGGAAGAAATT
GCTGTGGCCAAGAGGAGGGCTGAGGAGGAACAGCTGCAGCAGCAACAAAG
AGATGCATTAAAGCTTTTGTCTGATAATGCAGTAAATGGAAGCTTAGCTG
AAGAATCTGCTGTTGAAAGCAAAGGTATGGATGTTGAGCATGATTATCAT
GATGATTCCATCCGCGAAAATCACATGGCAGGAGATCCGTCTTCACAAAA
TGGTAATGGGGATGAATCAACCAATGTGCCGATAGCTGCATCAGATATGA
GGCAGAGTGGCAATGTGCCAGCAAGAAAGTTGGGGTTTGGTCTTGTTGGC
TCTGGAAAACGTACAGCTGTCCCTTCTGTTTTCCATGTTGAGGATGATGA
TGATGCCGACAAGGATAAAAAGATGAGGCCGTTGGTTCCCATTGATTACT
CAACTGAGGAACTGCAGGCAGCCCAACCTCATGTCTCTGGGGCAAACCCT
CCGAATTTGGCTGCAGCAGCAGAATTTGCGAAGCGTATTTCAAATGTTAA
TTCCAAAGAAGAGAAATCTGATGCAGAAAGAGAAAGAAGTAGACGCTTGC
ACGATAGGTCAAGCCAGAGGGAGAAGGACCGGAGTGATGAGGATAATAAT
CGCACCAGAGATGAGCACAAAGAGAAGATTCTTGACAGGGACAGAGATCG
GGAGCATGGTTTGGATAAAGTGAAGACGCCAGATAACAAGAAACTTTTGG
ATGCAAAACAATTGATTGATATGATCCCTAAGACAAAGGAGGAGTTGTTC
TCATATGAGATAAATTGGGCCGTGTACGACAAGCATGAGCTGCATGAGAG
AATGAGACCGTGGATTTCAAAGAGATTACAGAGTTTCTCGGAGAAGAAGA
AACTACTTTGGTAGACTATATTGTAATCAGTACTCCAGACCATGTGAAGG
CATCCCAAATGTTGGAGTTGCTACAAACTATTTTAAACCATGAAGCTGAA
ATGTTTGTCCTTAAAAAGTGGAAGATGGTCATCTTTTGAAATCAAAAAGG
AAAAAAGGGTCTTGGCGTTGAATTAAAATCCTAAAATGGGATCGGTTACT
CATCCTTTAAAATCAAGAAAAGAAAAACTTGCATTGGAAAATAAAAACCC
CTAAAGGGGGTTCTTGGTTTTTTTGTTTTGTTTTCTGGCCTAGGTTGCAA
GGGGGGGAATTTTTGGCCCATTTGGGAATCCCTTTAAAATAAAAAAAAAA
CCCCCCTTTTTTGGTTTATTCCTCCCCTCTCCCCCCTTCGGGGGGAAAAA
ACGACAAAACAAAGGGGGAGGGGTGTGGTTAAAATATTT
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