DY258129

Overview
NameDY258129
Unique NameDY258129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258129 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.439e-24
Identity = 57/78 (73.08%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    3 HKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSS---APPETGTVDDGSSPLEPQVAP 227
            HKE VAQIAELLLEKEVLHQDDL +VLGERPFKS E TNYDRFK GFEE EK S   + P     DDG  PLEPQV P
Sbjct:  735 HKEQVAQIAELLLEKEVLHQDDLTKVLGERPFKSGETTNYDRFKSGFEESEKESQKESVPVKPVEDDGIPPLEPQVVP 812          
BLAST of DY258129 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.229e-23
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 3
Query:    3 HKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSA--PPETGTVDDGS-SPLEPQVAP 227
            HK  VA+IAELLLEKEVLHQDDLL++LGERPFKS+E+TNYDRFK GFEE EK SA  P     VDDG+  P EPQV P
Sbjct:  731 HKVKVAEIAELLLEKEVLHQDDLLKILGERPFKSAEVTNYDRFKSGFEETEKDSAATPTVEPVVDDGAPPPFEPQVVP 808          
BLAST of DY258129 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.711e-20
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 3
Query:    3 HKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEE--KSSAPPETGTVDDGSSPLEPQVAP 227
            HKE VA+IAE+LLEKEVLHQDDL+RVLGERPFK+SE TNYD FKQGF++EE  K+    +T   DD  +P   +V P
Sbjct:  745 HKEQVAKIAEMLLEKEVLHQDDLVRVLGERPFKASEPTNYDLFKQGFQDEEDSKNQEAAKTPQPDDDGTPSLGEVVP 821          
BLAST of DY258129 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 HKEHVAQIAELLLEKEVLHQDDLLRVLGERPFKSSELTNYDRFKQGFEEEEKSSAPPETGTVDDGSS 203
            HK+ VAQIAELLLEKEVLHQDDL++VLGERPFK+ E TNYDRFKQGF++E+ S+   E    D  SS
Sbjct:  730 HKDQVAQIAELLLEKEVLHQDDLVQVLGERPFKTLEPTNYDRFKQGFQDED-SNRNAELSNADGASS 795          
The following BLAST results are available for this feature:
BLAST of DY258129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FTSHA_ARATH3.439e-2473.08Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH3_ARATH2.229e-2371.79Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH8_ORYSJ6.711e-2063.64Cell division protease ftsH homolog 8, mitochondri... [more]
FTSH3_ORYSJ2.159e-1868.66Cell division protease ftsH homolog 3, mitochondri... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3AG01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258129 ID=DY258129; Name=DY258129; organism=Citrus clementina; type=EST; length=369bp
AACACAAAGAGCATGTAGCTCAGATTGCCGAGTTATTGCTTGAAAAGGAA
GTTCTTCACCAAGATGATCTGCTTCGAGTTCTGGGTGAACGGCCATTCAA
ATCCAGTGAGCTCACAAATTATGACAGATTCAAGCAAGGTTTCGAAGAGG
AAGAGAAGAGCTCAGCGCCCCCAGAGACTGGAACCGTGGATGATGGTTCT
TCACCACTCGAGCCTCAGGTTGCTCCGGCATGAGAAACCATGTAGGTTAA
ATGTTTGTAATTCATACTTGAGATGATTTTTTCTTTTTTTTTCCCCGCCC
GTTGGAATTAGGGTACTCTGTAATTTGTAATCATATTCATAGTGTTCAAT
TTTTATTTAATTTTATCCC
back to top