DY258177

Overview
NameDY258177
Unique NameDY258177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258177 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.014e-13
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 3
Query:    3 AIRALLEVVESGGKNIEVAVMTREHGLRQLEESEIDAIVSEI 128
            AIRALLEVVESGGKNIEVAVMT+EHGL+QLEE+EIDAIV+EI
Sbjct:  190 AIRALLEVVESGGKNIEVAVMTKEHGLKQLEEAEIDAIVAEI 231          
BLAST of DY258177 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 3
Query:    3 AIRALLEVVESGGKNIEVAVMTREHGLRQLEESEIDAIVSEI 128
            AIRALLEVVESGGKNIEVAVMT+E+GLRQLEE+EIDAIV+EI
Sbjct:  190 AIRALLEVVESGGKNIEVAVMTKENGLRQLEEAEIDAIVAEI 231          
BLAST of DY258177 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.240e-11
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 3
Query:    3 AIRALLEVVESGGKNIEVAVMTREH-GLRQLEESEIDAIVSEI 128
            AIRALLEVVESGGKNIEVAVMTRE  GLRQLEE+EIDAIV++I
Sbjct:  190 AIRALLEVVESGGKNIEVAVMTREETGLRQLEEAEIDAIVAKI 232          
BLAST of DY258177 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 AIRALLEVVESGGKNIEVAVMTREHGLRQLEESEIDAIVSEI 128
            AIRALLEVVESGGKNIE+AVMT++ GLRQLEE+EID  V+EI
Sbjct:  190 AIRALLEVVESGGKNIEIAVMTQKDGLRQLEEAEIDEYVAEI 231          
BLAST of DY258177 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 AIRALLEVVESGGKNIEVAVMTREHGLRQLEESEIDAIVSEI 128
            AIRALLEVVESGGKNIE+AVMT++ GLRQLEE+EID  V+EI
Sbjct:  190 AIRALLEVVESGGKNIEIAVMTQKDGLRQLEEAEIDEYVAEI 231          
BLAST of DY258177 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.712e-11
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 3
Query:    3 AIRALLEVVESGGKNIEVAVMTREHG-LRQLEESEIDAIVSEI 128
            AIRALLEVVESGGKNIEVAVMTRE G L+QLEE EID IV+EI
Sbjct:  190 AIRALLEVVESGGKNIEVAVMTREEGVLKQLEEEEIDIIVAEI 232          
The following BLAST results are available for this feature:
BLAST of DY258177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSA7_SOLLC1.014e-1390.48Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA7_CICAR2.951e-1390.48Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7B_ARATH1.240e-1188.37Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA7B_ORYSJ3.608e-1180.95Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI3.608e-1180.95Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7A_ARATH4.712e-1186.05Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3BF07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258177 ID=DY258177; Name=DY258177; organism=Citrus clementina; type=EST; length=473bp
TGGCCATTCGTGCTTTGCTTGAAGTTGTTGAGAGTGGAGGCAAGAACATT
GAAGTTGCTGTGATGACGAGAGAGCATGGTCTCCGGCAACTTGAAGAATC
AGAGATCGATGCCATTGTCTCTGAGATTGAAGCAGAGAAGGCTGCTGCAG
AGGCTGCAAAGAAGGCCCCTCCAAAAGAAACCTAGAGTTATTGATTAAAA
AAATCAGTGACTTCTTAGGATGTGGACATGTTCAAATTTCTCTTACAAAA
AAAACTGCTTGTAAGTTGGCACGCTATTGTTTTTTCAATGGTACTTCTAT
GTTATTAAAACTTTTACCAGTCTTTCTTTTAGCTTTTGAACCTGAAATTG
CATAGCATTGTAGGCTTATATGTATTCCTTGATTATGAGATTAAATGACT
CTGGAAACGCATGAATTTGTATGTTGTATCTCATTGAAGGATATGGATAC
AAAGTTGCAAAAAAAAAAAAAAA
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