DY258179

Overview
NameDY258179
Unique NameDY258179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP2L_MOUSE (Mitochondrial inner membrane protease subunit 2 OS=Mus musculus GN=Immp2l PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 52/129 (40.31%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  345 SFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPV 728
            +F K  F    + +T  DR A +  V GSSM P+ N       GS S D VL+  + ++ ++   GD++   SP N ++K +KR+I L GD + T    N ++KVP GH WVEGD+   S DS SFGPV
Sbjct:   14 AFCKGFFVAVPVAVTFLDRVACVARVEGSSMQPSLNPG-----GSQSSDVVLLNHWKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHGHSFDSNSFGPV 137          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP2L_DANRE (Mitochondrial inner membrane protease subunit 2 OS=Danio rerio GN=immp2l PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.004e-18
Identity = 49/142 (34.51%), Postives = 80/142 (56.34%), Query Frame = 3
Query:  330 QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPVKSTMPYTR 752
            + +  +F    F    + +T+ DR A +  V G+SM P+ N   +S     S D VL+ ++ ++ Y    GD++   SP N ++K +KR+IG+ GD+I T    N  ++VP+GH W+EGD+   S DS +FGPV   + + R
Sbjct:    8 RRYFKAFVSGFFVAVPVTVTVLDRLAYVARVEGASMQPSLNPDGES-----SPDVVLLNRWSVRNYHVQRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEGDHHGHSFDSNAFGPVSLGLVHGR 144          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP2L_HUMAN (Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens GN=IMMP2L PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.713e-18
Identity = 51/134 (38.06%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  330 QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPV 728
            + ++ +F K  F    + +T  DR A +  V G+SM P+ N       GS S D VL+  + ++ ++   GD++   SP N ++K +KR+I L GD + T    N  +KVP GH WVEGD+   S DS SFGPV
Sbjct:    9 KRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGPV 137          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP2L_BOVIN (Mitochondrial inner membrane protease subunit 2 OS=Bos taurus GN=IMMP2L PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  330 QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTP-MTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPV 728
            + +  +F K  F    + +T  DR A +  V G+SM P+ N       GS S D VL+  + ++ ++   GD++   SP N ++K +KR+I L GD + T    N  +KVP GH WVEGD+   S DS SFGPV
Sbjct:    9 RRYFKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNHWKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGPV 137          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP2_YEAST (Mitochondrial inner membrane protease subunit 2 OS=Saccharomyces cerevisiae GN=IMP2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.402e-17
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  384 LTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQK-YKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT--PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPVKS 734
            LTI++    I  V+G+SM PT N  T++    L+ D+VL+ KF ++     S  D+I+F +P+N ++ + KR+ GLP D I T  P     + +P GH WVEGDN   S+DS +FGP+ S
Sbjct:   25 LTINNNVVHIAQVKGTSMQPTLNPQTET----LATDWVLLWKFGVKNPSNLSRDDIILFKAPTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYFHSIDSNTFGPISS 140          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP2L_XENLA (Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis GN=immp2l PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.094e-16
Identity = 48/134 (35.82%), Postives = 69/134 (51.49%), Query Frame = 3
Query:  330 QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPV 728
            + ++ +F    F    + +T  DR A I  V G SM P+ N            D VL+ ++  + Y    GD++   SP N ++K +KR+I L GD + T    N  +KVP GH WVEGD+   S DS +FGPV
Sbjct:    6 RRYVRAFISGFFVAVPVTVTFLDRVACIARVEGVSMQPSLNPDARG-----ESDIVLLNRWRARNYDVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTLGHKNRYVKVPRGHVWVEGDHHGHSFDSNAFGPV 134          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP1L_HUMAN (Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.831e-13
Identity = 48/134 (35.82%), Postives = 62/134 (46.27%), Query Frame = 3
Query:  366 TFGLIGLTIS---------DRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMK----VPNGHCWVEGDNPSSSLDSRSFGPV 728
            TF L+G TI          +    +V   G SM PT            + D V  E      Y    GD+++  SPS+ K    KR+IGL GD I T   +D  K    VP GH W+EGDN  +S DSR +GP+
Sbjct:    9 TFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ----------NSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDNLQNSTDSRCYGPI 132          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP2L_SCHPO (Mitochondrial inner membrane protease subunit 2 OS=Schizosaccharomyces pombe GN=SPBC336.13c PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.829e-13
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  354 KNCFTFGLIGLT--------ISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT--PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPVKS 734
            K+ F   L+G+T        +     S+  + G SM P FN  T+     L  D VL+ K+      +  GDV++  SP N +E  VKR++G+  D + T  P    ++ VP GH WVEGD    S+DS  FGPV +
Sbjct:   12 KSVFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNM----LQRDRVLLWKW---NKDYKRGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQFHSIDSNKFGPVST 141          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP1L_MOUSE (Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.306e-13
Identity = 44/124 (35.48%), Postives = 59/124 (47.58%), Query Frame = 3
Query:  369 FGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMK----VPNGHCWVEGDNPSSSLDSRSFGPV 728
            +G I     +    +V   G SM PT            + D V  E      Y    GD+++  SPS+ K    KR+IGL GD I +   +DV K    VP GH W+EGDN  +S DSR +GP+
Sbjct:   19 YGCIAHCAFEYVGGVVMCSGPSMEPTIQ----------NSDIVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILSTSPSDVFKSRSYVPTGHVWLEGDNLQNSTDSRYYGPI 132          
BLAST of DY258179 vs. ExPASy Swiss-Prot
Match: IMP1_SCHPO (Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe GN=imp1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  426 GSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKF-SHGDVIVFCSPSNHKEKHVKRIIGLPGD--WIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPV 728
            G SM PT N            ++VL++K   +  +  S GDV+V   PS+ K+   KRIIG+PGD  ++    +N  + +P GH W+ GDN + SLDSR++GPV
Sbjct:   33 GPSMMPTLNS---------GGEFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRIIGMPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPV 127          
The following BLAST results are available for this feature:
BLAST of DY258179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
IMP2L_MOUSE7.691e-1940.31Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2L_DANRE1.004e-1834.51Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2L_HUMAN1.713e-1838.06Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2L_BOVIN2.238e-1838.06Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2_YEAST9.402e-1740.83Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP2L_XENLA6.094e-1635.82Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP1L_HUMAN2.831e-1335.82Mitochondrial inner membrane protease subunit 1 OS... [more]
IMP2L_SCHPO4.829e-1335.04Mitochondrial inner membrane protease subunit 2 OS... [more]
IMP1L_MOUSE6.306e-1335.48Mitochondrial inner membrane protease subunit 1 OS... [more]
IMP1_SCHPO3.460e-1139.42Mitochondrial inner membrane protease subunit 1 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3BF11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258179 ID=DY258179; Name=DY258179; organism=Citrus clementina; type=EST; length=925bp
GAATCTATGATCCTTTGTGTTCACACAATATAACACAGAGAATACGAATG
ATGCAATAAGCAAAATCATAGGAATCTTTGGACAAGCAAATTCCTTTAAA
ATATTATTATTAATTTTTTTATTTTGGCAGATTCTCTCTTTCTAACATCA
TAGCCTCCTACTCAAAATTGGCAGATTCTCTTTCTCTCTCAACTAAAGAG
CGCCGGTGACAACTTTTGTACTCTCAAGTTTGATCTCTCAGTCTCAGCTT
CAATCTCTAAGCTTAATAGGGCAGAACGACTAGTGATTTTTGCATATGTA
TACTCGGTGAAATTTCGATTATGGCAGCTCAGAACTTCTTATGGAGCTTC
ACAAAAAATTGTTTCACCTTTGGGCTTATTGGTCTTACAATTTCTGATCG
ATATGCCAGTATTGTGCCTGTGCGAGGCTCTTCTATGTCACCCACATTTA
ACCTTACTACCGATTCCTTTATGGGGTCATTGTCTGACGACTATGTTCTC
GTGGAGAAGTTTTGTCTTCAAAAATACAAATTTTCCCATGGTGATGTCAT
AGTATTCTGCTCACCCAGCAATCATAAGGAGAAACACGTAAAGAGAATTA
TTGGATTGCCTGGTGATTGGATTGGAACTCCTATGACTAATGATGTGATG
AAAGTTCCTAATGGACATTGTTGGGTTGAGGGAGATAATCCATCTTCTAG
CCTGGATTCAAGATCTTTCGGCCCTGTTAAGTCTACAATGCCATATACTC
GTCTCAAAAAATTATTAAAATTGTTATTATGGTAGTTATGATGTTGAGTG
TTGAAAATTGTCTAAACTGTATTCCCTGTCAGAATCTTTGGTTCAAAAAC
TCATGTTAAAATAAGTATCTCAATCTAACTCCTGATTTTGACTCTCAAAA
TAACAGAAACATGTAAATCTTCTGT
back to top