DY258189

Overview
NameDY258189
Unique NameDY258189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length982
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig55 contig Ccv1_Contig55:19..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 3.514e-73
Identity = 136/235 (57.87%), Postives = 162/235 (68.94%), Query Frame = 2
Query:   65 MPEKITAENILDNLVETIPDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            MP+K   E+++ +LV+   + VQK K               RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD++C G LKQ             +GSCCNFLTVLYIGFV AHT+PVLYE++EDEVD             YKKLD+GFLS
Sbjct:    1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLS 234          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.261e-38
Identity = 84/191 (43.98%), Postives = 112/191 (58.64%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++P K+P   +  E F  I + +   +N+A  +L+ I+ G  LK+             +G+  NFLT++YI FV  HT+P+LYEKHED+VD             Y   D   LS
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLS 241          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 8.177e-38
Identity = 79/191 (41.36%), Postives = 113/191 (59.16%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  ++P   +P E F  + +++   +N+A  +L+ I+ G  LK+             +G+  NFLT++YI FV  HT+P+LYEKHED+VD             Y   D   LS
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLS 241          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.181e-36
Identity = 73/191 (38.22%), Postives = 107/191 (56.02%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+SP K+P   +P E    + + +   +N     L++I+ G  LK+             +G C NFLT+ YI  V   T+P+ Y+K+ED+VD             Y  LD   LS
Sbjct:   72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLS 262          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.798e-35
Identity = 68/191 (35.60%), Postives = 107/191 (56.02%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++SP K+P   +P E    + + +   +N  +  L++I+ G  +K+             +G C +FLT+ YI  V   T+P+ Y+K+ED+VDS            Y  LD+   S
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFS 258          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.961e-35
Identity = 74/191 (38.74%), Postives = 105/191 (54.97%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++SP  +P   +P +V   + + +   +N    +L+DI+ G  LK+             +GS CNFLT++YI  V   T+PVLYEK+ED+VD             Y + D   LS
Sbjct:   47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLS 237          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.105e-34
Identity = 75/190 (39.47%), Postives = 101/190 (53.16%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFL 766
            RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P   +P +    + + +   +N  L LL++I+ G  +K+             IGSC NFLT+ Y   V   T+PVLYEK+ED+VD+            Y  LD   L
Sbjct:   51 RLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVL 240          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.548e-31
Identity = 68/191 (35.60%), Postives = 103/191 (53.93%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D++CG                  IG+  NF+ +L+IGFV+  TLPV+YE +ED+VD+            YKK+D+  LS
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLS 212          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.183e-28
Identity = 67/191 (35.08%), Postives = 102/191 (53.40%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+SP  +    +P +      + +   +N A   L+ I+    +K              IG+  +FL++LYI FV  HT+P+LYEK+EDE+D             Y+  ++ FLS
Sbjct:   53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLS 240          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.430e-23
Identity = 57/191 (29.84%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  197 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 769
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D++ G   +              IGS  +  T+LYIG + + T+P LY K++ +VD             YK +D   +S
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVIS 214          
The following BLAST results are available for this feature:
BLAST of DY258189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLH_ARATH3.514e-7357.87Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.261e-3843.98Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH8.177e-3841.36Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH1.181e-3638.22Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH3.798e-3535.60Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH4.961e-3538.74Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.105e-3439.47Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH2.548e-3135.60Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.183e-2835.08Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH7.430e-2329.84Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BH09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258189 ID=DY258189; Name=DY258189; organism=Citrus clementina; type=EST; length=982bp
GACAACTCCAATCATCTACTCAACAGACCCCATTTTTTTCCTTTTTTCTT
GAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAGAGAACATTTTGGAC
AACCTTGTGGAAACCATTCCAGATAAGGTTCAAAAGCAGAAAGCTGTATC
ATTTTTTGAGGAAGAGACATCAAGCTCAGTCACTGCTCGTTTCAATCGGC
TGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGGGCGGTGGAAAATCT
GCTGATGTTTTGTTATGGAGGAACAAGAAGATATCAGCCAGTGTATTAAT
GGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCTTAACTACCATTTTC
TGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGCTTGCTCAATTTTTT
TGGGTAAACATTTCGGGCTTATTTAACAGATCACCATCGAAAGTTCCCCG
CTTTGTTCTGCCTCCAGAGGTATTTGCTAACATTGGCACGACAGTTTGTG
CTAATGTTAACGAAGCTCTGGGGCTACTTCAGGACATTTCATGTGGAGGA
AAACTGAAACAACTTCTTGTGGCTGTAGCAAGCTTGTGGGCTGCTGCTGT
GATAGGGAGCTGTTGTAACTTTTTGACCGTTCTATATATTGGTTTTGTTG
CTGCCCATACATTGCCAGTCCTGTATGAGAAGCATGAAGATGAAGTTGAC
AGCTTTCTGAACAATGTCTTCCAGCAGCTCCAGAATCAGTACAAGAAGCT
TGATTCAGGTTTCCTCAGCAAAATCCCCAAGGGCAAGTTCAAAGGGAAGA
AAAGCGAATAGATCGATTGATCAAACATTAGATTTTACATTTCCCCCTTG
CCATGACTAGTGATGGAACGTAACGACNACATTGTCATATTATTAATGTT
TATTATGGTGGAANTTATGTATTATTATAGATATTGACCTGGNTGATTTA
TAAGAGTCCAAATAACTACTAATCCCTTTTTC
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