DY258230

Overview
NameDY258230
Unique NameDY258230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1296
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258230 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.196e-23
Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 1
Query:  274 LEFTVPLDFTNKVPLVVYFHGGAFVISSSAYPKYHTTLNNLVAEADIIVVSVNYRLAPEHPLPAAFEDSLGALKWVASHAKGEGDGNRPLPVLNPEAWLQEFVDFD-KVFLAGDNAGSSIAHYLGLRITDEVRDLKILSIVMIMPYFWGKNPIGVEVT---DHFMKQMVDNW-WLYVCPSDKGCDDPLITPLVESAPSAASLACEKLLVNVADKDVLND 915
            LE T PL  T  VP++++FHGG+F  SS+    Y T    LV    ++VVSV+YR +PEH  P A++D   AL WV S                   WLQ   D +  V+LAGD++G +IAH + +R T+E   +K+L  +++ P F G+     E T    +F+     +W W    P  +  D P   P      S   +   K LV VA  D++ D
Sbjct:   94 LELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS-----------------RVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE--GVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQD 293          
BLAST of DY258230 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.512e-19
Identity = 69/221 (31.22%), Postives = 105/221 (47.51%), Query Frame = 1
Query:  268 SQLEFTVPLDFTNKVPLVVYFHGGAFVISSSAYPKYHTTLNNLVAEADIIVVSVNYRLAPEHPLPAAFEDSLGALKWVASHAKGEGDGNRPLPVLNPEAWLQEFVDFD-KVFLAGDNAGSSIAHYLGLRITDEVRDLKILSIVMIMPYFWGKNPIGVEVT---DHFMKQMVDNW-WLYVCPSDKGCDDPLITPLVESAPSAASLACEKLLVNVADKDVLND 915
            S L+   P+D  + VP++++FHGG+F  SS+    Y T    LV     +VVSVNYR APE+P P A++D   AL WV                 N  +WL+   D    +FLAGD++G +IAH + LR  +    + +L  +++ P F G      E +    +F+     +W W    P  +  + P   P      S   ++  K LV VA  D++ D
Sbjct:   93 SILDLEKPVD-GDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV-----------------NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGES--GIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRD 293          
BLAST of DY258230 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.310e-19
Identity = 65/207 (31.40%), Postives = 98/207 (47.34%), Query Frame = 1
Query:  310 VPLVVYFHGGAFVISSSAYPKYHTTLNNLVAEADIIVVSVNYRLAPEHPLPAAFEDSLGALKWVASHAKGEGDGNRPLPVLNPEAWLQEFVDFD-KVFLAGDNAGSSIAHYLGLRITDEVRDLKILSIVMIMPYFWGKNPIGVEVT---DHFMKQMVDNW-WLYVCPSDKGCDDPLITPLVESAPSAASLACEKLLVNVADKDVLND 915
            VP++V+FHGG+F  SS+    Y T    LV     +VVSVNYR APE+  P A++D    LKWV                 N  +WL+   D   ++FLAGD++G +I H + +R  +   D  +L  +++ P F G      E      +F+     +W W    P  +  + P  +P    + S   L+  K LV VA  D++ D
Sbjct:  104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV-----------------NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID--VLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQD 291          
BLAST of DY258230 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.247e-18
Identity = 65/218 (29.82%), Postives = 98/218 (44.95%), Query Frame = 1
Query:  274 LEFTVPLDFTNKVPLVVYFHGGAFVISSSAYPKYHTTLNNLVAEADIIVVSVNYRLAPEHPLPAAFEDSLGALKWVASHAKGEGDGNRPLPVLNPEAWLQEFVDFDKVFLAGDNAGSSIAHYLGLRITDEVRDLKILSIVMIMPYFWGKNPIGVEVT---DHFMKQMVDNW-WLYVCPSDKGCDDPLITPLVESAPSAASLACEKLLVNVADKDVLND 915
            LEF          P++++FHGG+FV SS++   Y +     V  +  +VVSVNYR APEH  P A++D   ALKWV S       G+                   +VFL+GD++G +IAH++ +R  DE   +K+   +++   F G      E      +F+     +W W    P D   D P   P   +      L   K L+ V+  D+  D
Sbjct:  101 LEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQA----------------RVFLSGDSSGGNIAHHVAVRAADE--GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCD 300          
The following BLAST results are available for this feature:
BLAST of DY258230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH2.196e-2333.79Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH2.512e-1931.22Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH7.310e-1931.40Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ1.247e-1829.82Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CG08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258230 ID=DY258230; Name=DY258230; organism=Citrus clementina; type=EST; length=1296bp
GGAGGTTGGAAGAAATCTTCTTCTAACTTTATTTTAAGCCGCGTAAAGGA
TCTCAACTCAAACAAACGATACTTGCATCTCTCTCAGAATTCCAAAATGG
GTTCAATCAAATCTGCAATAAGTCTCGAGGGAGGTTTTTCCTTATCTTCT
ACTATACTAACATGGGACGGTGGAAAGACTTGCGGGATCTGAAGTGGCTG
CCGCTGGCTTGAATACTGCAACCAACGTTCTATCCAAAGACGTCCTGATC
ATACCACATACGCGGCGTCTCAGCTAGAGTTTACCGTCCCACTAGACTTC
ACAAATAAGGTTCCCCTCGTTGTATACTTTCACGGTGGTGCCTTTGTCAT
ATCATCATCCGCATATCCCAAATACCACACCACCCTCAACAACCTGGTTG
CCGAGGCTGACATCATTGTTGTCTCCGTTAACTACAGATTGGCCCCGGAA
CATCCTCTTCCCGCTGCATTTGAGGACTCTTTGGGTGCACTCAAGTGGGT
GGCTTCCCATGCTAAGGGTGAGGGAGATGGCAACCGCCCTCTACCTGTAC
TTAATCCAGAAGCTTGGCTCCAGGAATTTGTTGACTTCGACAAGGTCTTT
TTGGCTGGCGACAACGCTGGTTCTTCTATTGCACATTACTTGGGCCTGCG
GATCACGGACGAGGTCCGGGACTTGAAGATTCTAAGTATTGTTATGATCA
TGCCTTATTTCTGGGGGAAGAACCCGATAGGAGTTGAGGTGACTGATCAT
TTCATGAAACAAATGGTTGACAATTGGTGGCTTTATGTTTGTCCTTCTGA
TAAAGGCTGTGATGATCCGCTTATCACCCCGTTGGTGGAAAGCGCACCGA
GCGCTGCGAGCCTGGCATGTGAGAAGCTGCTTGTTAATGTCGCCGATAAA
GACGTACTCAACGACAGGGGCAGGCTTTACTATGGAAATTAGGGTTAAGG
TACCAACTGGGCTGGAAAGGCAGATTTTGTTTCATTTTCAGGGAAAGATC
ATGTGTTCCTAATTCGTGACCCGACCTCCACACCGCAAAAACTTGATCAG
AGGAGGGCTTCCTTCTTCACTCAAACACGGGGACTGAAATGAAAAATTGG
GGGGAAGCCGAAGGGGTGGTTAACTTTTCCGAAACCGCCAACTTTTTTCC
TCTTCCTTTCTTTTTTTCCCCCCCCCAGAGTCGGGGGAAAAAAAAAAAAT
TTTGTTCCAACACCACCCCGGCGCCCCCTTTTTATTACCCCTATAAAAAT
TGGTTTTTCTTTTTCTTCTTTTTTTTATCCCTTTCTTCCTCTCCCC
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