DY258233

Overview
NameDY258233
Unique NameDY258233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258233_ssr734 microsatellite DY258233_ssr734:734..748. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1059 contig Ccv1_Contig1059:1..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.856e-48
Identity = 108/182 (59.34%), Postives = 129/182 (70.88%), Query Frame = 3
Query:  174 NNY-LPFNENDSKEMLLYGLIAKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERD----NLRIENFVVLEDLGADY 704
            NNY LPFNENDS+EM LYGLI ++T +   ++   S+ +  + VSS   E     KSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGTF+S            FSMRGSSAILNF  ERVQESL ++K   E+GCSPVVALKRKHSMRR+M   NKK K+ D    +++++N VV EDLG  Y
Sbjct:   32 NNYSLPFNENDSEEMFLYGLIEQSTQQTYIDS--DSQDLPIKSVSSRKSE-----KSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRM--TNKKTKDSDFDHRSVKLDNVVVFEDLGEQY 204          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.990e-28
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  228 LIAKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHSMRRK 617
            L++  T     +       I +EE    T     +EKSYRGVR+RPWGKFAAEIRDSTR GIRVWLGTFD+            F+++GS A+LNFP + V+ESL+ M+  N  +G SPV+ALKRKHSMR +
Sbjct:   44 LLSSPTDNYCDDFFAFESSIIKEEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNR 174          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.394e-28
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  258 SEALVSSKRIKEEEVSSTTEENPT---KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHSMRRK 617
            S  ++  + I+  +VS++ EE      +E+SYRGVR+RPWGKFAAEIRDSTR+GIRVWLGTFD             F+ +GS A LNFPVE V+ESLK M+  N  +G SPV+ALKRKHS+R +
Sbjct:   55 SPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNR 178          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.605e-20
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  183 LPFNENDSKEMLLYGLIAKATPEATSEALVS------SKRIKEEEVSSTTEENP----------TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPV 518
            LP  ENDS++ML+YGL+  A    TS + +S      + +++  E  +  EE P           K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++            F MRGS A+LNFP+
Sbjct:   48 LPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPL 175          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.803e-20
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  183 LPFNENDSKEMLLYGLIAKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESL 539
            LP NENDS+EM+LY ++ +A           ++ +    +    +      K YRGVRRRPWGK+AAEIRDS RHG RVWLGTF++            F MRG+ A+LNFP E V  S+
Sbjct:    9 LPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNNILRPLQ---CIGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVNASV 124          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.205e-19
Identity = 58/138 (42.03%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  183 LPFNENDSKEMLLYGLIAKA-------------------------TPEATSEALVSSKRIKEEEVSSTTEE-NPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPV 518
            LP  ENDS++ML+YG++  A                         TPE  S A V S  +K+E+ S  +      K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++            F MRGS A+LNFP+
Sbjct:   71 LPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPE--SFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.761e-19
Identity = 55/125 (44.00%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  183 LPFNENDSKEMLLYGLIAKA-----TPE-ATSEALVSSKRIKEEEVSSTTEENPT--------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 515
            LP   NDS++M++YG +  A     TP   TSE +    R + E   ST+   PT        K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT++S            F MRG+ A+LNFP
Sbjct:   40 LPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFP 164          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.429e-18
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  195 ENDSKEMLLYGLIAKATPEATS-----EALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 521
            E ++K  +    I+  +P+ TS      +L  +  +K++EV    E  PT++K YRGVR+RPWGKFAAEIRD  R G RVWLGTFD+            F +RGS AI+NFP+E
Sbjct:   91 EFETKPNVSAARISSNSPKQTSFKERKPSLNIAIPMKQQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.159e-18
Identity = 62/165 (37.58%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  183 LPFNENDSKEMLLYGLIAKA-----TPEATSEALVSSKRIKEEEVSSTTEEN--PTKE----KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHS---MRRKMVTNNK 635
            LP   +DS++M++Y L+  A     +P   S   V S++ +EE V S  E    P  E    + YRGVRRRPWGKFAAEIRD  ++G RVWLGT+++            + MRGS A LNFP        + ++   +   SP  A   ++S    RRK V   K
Sbjct:   41 LPLKVDDSEDMVIYTLLKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSSPKRRRKAVATEK 205          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.094e-18
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  183 LPFNENDSKEMLLYGLIAKATPEATSEALVSSKRIK---EEEVSSTTEENPT---------------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 515
            LP   +DS++M++YGL++ A     +   ++S  IK    EE+   T   P+               K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT+++            + MRGS A+LNFP
Sbjct:   32 LPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160          
The following BLAST results are available for this feature:
BLAST of DY258233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ERF92_ARATH3.856e-4859.34Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF94_ARATH1.990e-2850.38Ethylene-responsive transcription factor ERF094 OS... [more]
ERF93_ARATH3.394e-2854.03Ethylene-responsive transcription factor 15 OS=Ara... [more]
EF101_ARATH2.605e-2043.75Ethylene-responsive transcription factor 2 OS=Arab... [more]
PTI5_SOLLC5.803e-2044.54Pathogenesis-related genes transcriptional activat... [more]
EF100_ARATH2.205e-1942.03Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_SOLLC3.761e-1944.00Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF5_TOBAC1.429e-1844.74Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF1_TOBAC4.159e-1837.58Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_NICSY7.094e-1838.76Ethylene-responsive transcription factor 2 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258233 ID=DY258233; Name=DY258233; organism=Citrus clementina; type=EST; length=974bp
CGGGGACTGAACTACGCAACACAACTAGGGAAAAAACAGAGTGAAAAACA
GAGTCTCAGAACCTGAACACACACTCTCATCAAATCCTAATGGATTCCTT
GTTCTTCCACTCTCCAAATTCAATTTCCTCATCGGAATCCTCTTTCGGGT
CACCGGAGTCTTTCCCTTTTTATAACAATTATCTTCCATTCAATGAAAAT
GACTCAAAAGAAATGCTTCTCTATGGACTAATAGCAAAAGCCACACCGGA
AGCAACATCAGAAGCACTAGTAAGCTCCAAGAGAATTAAAGAAGAAGAGG
TGAGTTCAACAACAGAGGAAAACCCCACCAAGGAAAAGTCATATAGAGGC
GTTCGACGGCGGCCGTGGGGGAAATTTGCAGCAGAAATAAGAGATTCAAC
TAGGCATGGGATTAGGGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAG
CTGCTTTGGCTTACGATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCT
ATACTCAATTTTCCCGTTGAAAGGGTTCAAGAATCACTTAAAGACATGAA
GTGTAACACCGAGGAGGGATGCTCACCTGTGGTTGCACTAAAGAGGAAAC
ATTCTATGAGAAGAAAAATGGTGACTAATAATAAGAAGCATAAAGAGAGA
GATAATTTGAGGATTGAAAATTTTGTGGTGTTGGAAGATTTAGGAGCAGA
TTACTTGGAAGAGCTGCTAAGTTCATCTGAAAGTACTACTACTACTACAG
CAAGACCTCGCTAATTGGTGAATTAGATAATAAGTCAACTACTTGTAACT
TTCTGGCCTTATCTTAATCTTCTTGCCCTTTTTTTTTTAATTTAGTTATT
GTCGTTATCTTCTTTTTTCATATGTAAACCAAAGACGGTTTATGCCTGTA
CAAGCTTCCATTTTTTGAAAGCAATTCGGGGGTGATCCTGTATCTAGTTT
CTTTTATTTAATACGAAGTTAAAT
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