DY258257

Overview
NameDY258257
Unique NameDY258257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1253
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10107 contig Ccv1_Contig10107:4..1256. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258257 vs. ExPASy Swiss-Prot
Match: DSCR3_MOUSE (Down syndrome critical region protein 3 homolog OS=Mus musculus GN=Dscr3 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.532e-53
Identity = 112/287 (39.02%), Postives = 173/287 (60.28%), Query Frame = 2
Query:   80 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFQGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPE--LKSGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLARSFSVEFQVSVVISFRSE 922
            +T++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + ++   G+I SG TEVPF   L   G + L   YET+ G  +NIQY +  D+ R  L K L+ T EFIV +      +  ++P  V F IT +T    +    LP+  ++    ST C++  P+TGEL VE S   I SI++ L+R+E+    E    + + IQ  Q+ADGD+CRN+++P+Y++ PRL TCPT+   +F VEF+V+VV+   ++
Sbjct:    3 TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYTLRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQNVKERASLPKFFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNIQIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEVNVVVLLHAD 283          
BLAST of DY258257 vs. ExPASy Swiss-Prot
Match: DSCR3_PONAB (Down syndrome critical region protein 3 homolog OS=Pongo abelii GN=DSCR3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.256e-52
Identity = 112/282 (39.72%), Postives = 168/282 (59.57%), Query Frame = 2
Query:   80 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFQGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPE--LKSGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLARSFSVEFQVSVVI 907
            + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+ G  +NIQY +  D+ R  L K L+ T EFIV +      +   SP  V F IT +T    +   LLP+  L+    ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + IQ  Q+ADGDVCR +++PIY++ PRL TCPT+   +F VEF+V++V+
Sbjct:    3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSNIEMVKPGKFPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFSPSPVHFTITPETLQNARERALLPKFLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278          
BLAST of DY258257 vs. ExPASy Swiss-Prot
Match: DSCR3_HUMAN (Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.799e-52
Identity = 111/282 (39.36%), Postives = 168/282 (59.57%), Query Frame = 2
Query:   80 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFQGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPE--LKSGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLARSFSVEFQVSVVI 907
            + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+ G  +NIQY +  D+ R  L K L+ T EFIV +      +   +P  V F IT +T    +   LLP+  L+    ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + IQ  Q+ADGDVCR +++PIY++ PRL TCPT+   +F VEF+V++V+
Sbjct:    3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVDFTITPETLQNVKERALLPKFLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278          
BLAST of DY258257 vs. ExPASy Swiss-Prot
Match: DSCR3_DICDI (Down syndrome critical region protein 3 homolog OS=Dictyostelium discoideum GN=DDB_G0292212 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.429e-42
Identity = 90/288 (31.25%), Postives = 161/288 (55.90%), Query Frame = 2
Query:   80 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSG-RIGSGTTEVPFSMNLKQHGEENLERFYETFQGADINIQYLVTVDIMRGYLHKSLSATVEFIVE--TDKADLLERPVSPEMVVFYITQDTQRH---------PLLPELKSGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLARSFSVEFQVSVVI 907
            + +++KL + ++IYRP   + G +VI S   + H G+ + V G+  LQ+   S G+ E+ Y  +KPI ++  +  +   G +  +G TE+PF   L+    + L   Y+T+ G  +NIQY +  D+ RG L K LS T+EFIVE  +   ++L +     ++ F IT D+  +         P   ++  G +S  C++ +   G + +E++   I S+++ L+R+E+    +    E + IQ  Q+ADGD+ RN  +P+Y++ PRL TC +   ++F +EF+V++VI
Sbjct:    3 NVLDLKLKKIDKIYRPGSKVSGNVVINSKDDMSHSGVTIVVEGTVQLQLSSKSVGLFEAFYNSLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQL---YDTYHGVFVNIQYSIKCDVKRGILSKDLSKTIEFIVEVPSQNKEVLMKSTPESLITFNITPDSLVNFKKISKADVPTF-KISGGLVSAICNINEAFQGHMIIESADTVIKSVELQLVRVETCGCADGYAREVTEIQNIQIADGDIWRNFKIPLYMVFPRLFTCISTAGKTFKIEFEVNLVI 286          
The following BLAST results are available for this feature:
BLAST of DY258257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DSCR3_MOUSE2.532e-5339.02Down syndrome critical region protein 3 homolog OS... [more]
DSCR3_PONAB1.256e-5239.72Down syndrome critical region protein 3 homolog OS... [more]
DSCR3_HUMAN2.799e-5239.36Down syndrome critical region protein 3 OS=Homo sa... [more]
DSCR3_DICDI3.429e-4231.25Down syndrome critical region protein 3 homolog OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3DD10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258257 ID=DY258257; Name=DY258257; organism=Citrus clementina; type=EST; length=1253bp
GAGTCCCCCTTCTTCGGGTTCACGGACGTTTGTCCTCCTTCGCGCGTTTG
TCCTGAAGCTCAAGCTCCAGATCGACATGTCGACTGTAGAGATCAAACTT
TCCCGATCAAACCGCATATATCGGCCTTCTGAACCTCTTCAAGGTAAAAT
CGTAATCAAGTCTTCTTCTTCCATTTTTCACTATGGAATTCACCTCACCG
TTAACGGATCCGCCAATTTGCAGGTTCGAGGAGGATCAGCTGGTGTTGTT
GAGTCTTTGTACGGTGTTATCAAGCCTATTAAAATTCTAAAGAAGAGCCA
AGAGATCAGAACTTCTGGAAGGATTGGTTCAGGTACAACTGAGGTACCAT
TTTCCATGAACCTTAAGCAGCATGGAGAAGAAAATTTAGAAAGATTTTAT
GAGACCTTTCAAGGAGCAGATATCAACATCCAGTATTTGGTGACTGTAGA
TATAATGAGAGGATACTTACATAAATCACTGTCAGCTACAGTGGAATTCA
TTGTTGAAACTGATAAAGCTGATCTCCTTGAGCGACCAGTTTCTCCTGAG
ATGGTTGTCTTTTACATTACTCAGGATACTCAGAGACATCCTTTACTTCC
TGAACTAAAATCAGGAAAAATGTCCACTCAATGTTCCCTGTTGGATCCCA
TCACTGGAGAGCTAACGGTTGAAGCATCTTCTGTTCCTATTCACTCCATT
GACATTCACCTCCTTCGCATGGAGTCGATTCTTTTAGGAGAAAAGATTAT
ATCTGAAACCTCTTTGATACAGACAACGCAGGTAGCAGATGGAGATGTCT
GTCGCAACATGACTCTGCCTATATATGTCATACTCCCCCGTCTTTTGACT
TGTCCAACTGTCTTGGCCCGGTCATTTTCAGTTGAGTTTCAAGTGTCCGT
AGTCATCAGCTTTCGGTCAGAGCTTTCCCAAATGCATAAAAAGTCTGATT
CAACAACTCCAAGACTCTGGCTGGGCAATGGAAACTCTACCGGCTGAAAC
TTGTTCGAACCACCTGAATATATAACTGGTCAAAACCACAACTGTTCAAG
AGCATCCGTGAAATTCGGTTGAAAATGGCGGGTCAAAACCTCCAAATCAA
AAGAAGGTGAAATTCCCCCACCTGGAATAGGGGGGGAAGTACCCCTTGGG
GAACAGGGAACAAAGGAAAAGCAATTTGGTCGGGGGAAAACCGGGCCCGG
GTTCCTTTTTCAAAACAAGGGGGGTAAAAAACTTTATTTGTTGTTTTTTG
GGG
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