DY258303

Overview
NameDY258303
Unique NameDY258303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1314
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1076 contig Ccv1_Contig1076:1..1314. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258303 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.405e-17
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  301 NPIFLKRIRVHVKHVLPSWCTEEFQLRNKKNDYFTADANAIGEVIFTERQPFGPKPGFMVEGAALKTVPPIP 516
            N I  KRI V V+HV  S C EEF+LR K+ND   ADA A GE I T+RQP GPKPGFMVEG  L+TV PIP
Sbjct:   82 NRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIP 153
[Close]
BLAST of DY258303 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 5.339e-17
Identity = 46/72 (63.89%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  301 NPIFLKRIRVHVKHVLPSWCTEEFQLRNKKNDYFTADANAIGEVIFTERQPFGPKPGFMVEGAALKTVPPIP 516
            N I  KRI V V+HV  S C EEF+LR KKND   A A A GE I T+RQP GPKPGFMVEG  L+TV PIP
Sbjct:   82 NRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIP 153
[Close]
BLAST of DY258303 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.558e-11
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 3 
Query:    3 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 119
            AFVV ELEDDL K GHELSLTTGNA GRLACGVVGLTPV
Sbjct:  178 AFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 216
The following BLAST results are available for this feature:
BLAST of DY258303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RL212_ARATH1.405e-1763.8960S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH5.339e-1763.8960S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
SODCP_ZANAE2.558e-1189.74Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1AD08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258303 ID=DY258303; Name=DY258303; organism=Citrus clementina; type=EST; length=1314bp
GAGCCTTTGTGGTTCTTGAGCTTGAGGATGACCTTGAAAAAAGTGGGCAT
GAACTTAGTCTAACCACTGGTAATGCACGTGGAAGACTGGCTTGCGGTGT
CGTTGGCTTGACTCCAGTATGACATCCCCAAAACCCGCTGTGGTTGCACT
ATTTGCTGCCTGCTTTTTCCATATTATCCATCGTGAACCGAGTACAATGT
TGAAGATAGAGAGCGCGTAACACTACATTTGTGCAAACAGCTGGGACTAA
TAATGTCACCGCTTGCGCCCTCTATGCGAACATTAACAACAAAAGACGAT
AACCCGATCTTCCTTAAGAGGATTCGTGTTCATGTGAAGCATGTTCTTCC
TTCTTGGTGTACCGAAGAGTTCCAGCTGAGGAACAAAAAAAATGATTATT
TCACGGCCGATGCTAATGCAATAGGTGAGGTCATCTTTACTGAGAGGCAG
CCTTTCGGTCCTAAACCAGGTTTCATGGTGGAAGGCGCAGCATTGAAAAC
TGTCCCTCCTATTCCCTTATGATCGTCGTCAATGATCTTCAGGGTGGATC
CTACGTTATCTTTTTGGTATTGTTGCTGCTTTGTTACTTGCTGCATACTT
TTCTGGCACTGGTCTTATTTTGGATGTATCTTCCACCCTATTAGTCCTTG
TTTTTGGAGAGAAACTGCGATTGCAGAGACGTTCCTTTTCAATCTTCATT
TTTTTTACCAAACCCTCTCCCCCTCTCCACCCCAATGTTACACTCTGCAA
AAATCCCACTACTGTCCCCCGACTCCTTTCCTTTTGGCCAAGCTTTTTCT
TTTTTTACTAACTTTGCCCCCCTCCTCTCCCTTTTCTCTCCTTATCCAAA
ACACCCTTTCTCCCATTTCTTTTTCCCCTCCATCCTTCTTTCCCTCACAA
TAAAAATTTTCTTTCCCCTCCGACAAGCCCCCTCTATTCCCCTATCTCCA
TCGCCACCTCCTCCTGTAATCTCCCCCTCCCCTCCCCCCTTTCCTTCTCC
CCTCCCCCGTTCCTCCTTTTTCTCATCCCCCAATTCTCCTCTCCCTTAAT
ACCTCCTCCACTCACCCCCTCCATACTCCTCTCTCTTTCTCCCCTCAACC
ACACTAATCCCTCATACTCTATAAACCCTCCCCCCCTCACCCCTAATACA
CCACTCCCCCCCCGCTTTCTTACTTTTCTTTCCTATCTCCTTTTCCGGTG
CTTTATTTCTCATTTCCCTCCCTTGCCCTTCCCTGCACTCCCTCACCCTC
CACCTTCTCCCTCCCTCTATCCTCTCTTACACCTACTATACACCTGCTTC
TCTTCCATCGCTAT
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