DY258304

Overview
NameDY258304
Unique NameDY258304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1318
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1077 contig Ccv1_Contig1077:1..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258304 vs. ExPASy Swiss-Prot
Match: BI1_ARATH (Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1)

HSP 1 Score: 44.669 bits (104), Expect = 1.357e-11
Identity = 24/44 (54.55%), Postives = 27/44 (61.36%), Query Frame = 2
Query:  368 GA*IGPLIDPPIPSDLRIQISGFVGTGLAFPCFSEPAMAAMRTE 499
            GA +GPLI   I  D  I I+ FVGT +AF CFS  AM A R E
Sbjct:  101 GASVGPLIKVAIDVDPSILITAFVGTAIAFVCFSAAAMLARRRE 144          

HSP 2 Score: 34.6538 bits (78), Expect = 1.357e-11
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 3
Query:  546 LWLAWASPIFGGPTAILTLESHFELTGFVAYPVMN 650
            +WL +AS IFGG  +I   E +F L  FV Y V++
Sbjct:  160 MWLQFASSIFGGSASIFKFELYFGLLIFVGYMVVD 194          

HSP 3 Score: 31.5722 bits (70), Expect = 1.357e-11
Identity = 19/49 (38.78%), Postives = 24/49 (48.98%), Query Frame = 1
Query:  664 IHQPHFGHLHYVTPPLTLCQTFVAFFARILKPCPIHPPPKQGNKTKIKN 810
            I + H G + YV   LTL   FVA F RIL     +   K+  K K +N
Sbjct:  199 IEKAHLGDMDYVKHSLTLFTDFVAVFVRILIIMLKNSADKEEKKKKRRN 247          
The following BLAST results are available for this feature:
BLAST of DY258304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BI1_ARATH1.357e-1154.55Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1AD09FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258304 ID=DY258304; Name=DY258304; organism=Citrus clementina; type=EST; length=1318bp
CTATTTTCAATATGTGTGATCTTCTGCTTGTTAGTTGAGGATATTGAAGA
GAAGTATGGTATGGGAACTTCCATTTGCTGATTTCTTTTCTTCACCCAAC
CAAAGGTTATCATGGCCATAGGGTCTAAGGCTAGTTTTTAACTCAGTGGA
TTTAAAAGATTTGAGGAGATAGGAAATCACTGATCGAATATAAGTTATGA
GCTGATGGAATTAAACAATAAAATCTAAAATACTACTACTCTCCAACTTT
GTTGGATTACTTAGGGATTATGAAATGATATGGTCAATCGGTTTGGCTGC
CTCGAATACGCTAGTTATGAAGAAAATAACATCGTTTCTCTCCTCCCTGG
CTACCTGCCCCTTTAGAGGAGCATAAATTGGTCCCTTGATTGATCCCCCC
ATTCCAAGTGACCTGAGAATTCAGATATCTGGTTTTGTGGGAACTGGGCT
GGCTTTCCCTTGTTTTTCTGAACCTGCTATGGCTGCAATGAGGACAGAGT
ATTCTTATCTTGGGGGCTTGCTTTCATCATGTCTGTCCACCGCCTCTTTG
GTTGGCATGGGCTTCCCCCATCTTTGGAGGTCCAACAGCTATCCTAACAC
TTGAATCCCACTTCGAGCTGACGGGGTTTGTTGCCTACCCCGTGATGAAT
TTCCCCCGCAACAATTCACCAACCCCACTTTGGACACTTACATTATGTCA
CCCCTCCCCTGACCCTTTGCCAGACTTTTGTTGCTTTCTTTGCTCGTATT
CTCAAACCCTGTCCAATTCATCCCCCTCCAAAACAAGGAAATAAAACCAA
GATCAAAAACTTTCATTATTCTCAATCGGGACCGCCCATCCTTGTTTACC
TAAAGACTGACAACCTACAAATTTGTTCGGTTTTTTCTTGGGCTTTTCTT
TCCCTCCCCAAGCCATACATTTTTCACCAAAACAATTAACCTACAGGGAG
ATGGTTGTGCTTTCTTTTCTCTTGGCCAACTCCGCTCTACAAAACTGGCC
CACATGACACCCTACCCAAAAATTCTAACAAAATCTCACGCTCCTTTTTA
TCTCTCGAGCCTCCACGACCCCACAATAACACCAAATACACATCCCCTTT
CCCCCCAACAACTTTGCCCCTTGAAACAACAAACCCGCTCTCTCCACCCT
TTCCCCCCAACCAAAATGTCTCCAATTCCCTATACACCCCTCCAACCTCT
CTATCTTCCCCACCCCACCACTCTTTATAATCCCCCCCTATCATCACCAG
CCCCTATTCATACGTCTCCCTCTTTCTACCTCCCTGACCGCCTCCCTACC
CCACGACCCCGCGCCCGG
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