DY258311

Overview
NameDY258311
Unique NameDY258311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258311 vs. ExPASy Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-20
Identity = 49/103 (47.57%), Postives = 59/103 (57.28%), Query Frame = 2
Query:    2 PSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPXXXXXXXXXXXXXXXXHRPQKTPAAAEEQASKQTSSRSATEHSHPENNGASSRTAQNIKVMMNGAGK 310
            PSDG+KVWWQEFDVTPRQLE+VSNQMLELYEQNRVP                H     P           S+R   EHS+ +N G S++  QN +   NG+G+
Sbjct:  238 PSDGEKVWWQEFDVTPRQLEDVSNQMLELYEQNRVPASQVSEVESSVGGGSAHHVGSRP-----------SARLTHEHSNSDNLGGSTKATQN-RSNDNGSGE 328          

HSP 2 Score: 33.113 bits (74), Expect = 1.596e-20
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 1
Query:  283 QSNDEWSGEMGSVITDP--QADAETXDNQHHE 372
            +SND  SGE GSVIT+   + D ET D+ H E
Sbjct:  320 RSNDNGSGEAGSVITEQKGERDTETKDSMHTE 351          
BLAST of DY258311 vs. ExPASy Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.717e-19
Identity = 55/106 (51.89%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    2 PSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPXXXXXXXXXXXXXXXXHRPQKTPAAA--EEQASKQTSS-RSATEHSHPENNGASSRTAQNIKVMMNGAGK 310
            PSDG+KVWWQEFDVTPRQLE+VSNQMLELYEQNRVP                 RP    A +  E   S+QTSS RS  E S+ +N+G SS+   N +   NG G+
Sbjct:  238 PSDGEKVWWQEFDVTPRQLEDVSNQMLELYEQNRVPASQGSEVESSVGGGSAQRPGSRNAVSTDEHVGSRQTSSVRSTHEQSNSDNHGGSSKGVLN-QNNENGGGE 342          
BLAST of DY258311 vs. ExPASy Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 48/105 (45.71%), Postives = 55/105 (52.38%), Query Frame = 2
Query:    2 PSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRV---PXXXXXXXXXXXXXXXXHRPQKTPAAAEEQASKQ---------TSSRSATEHSHPENNGASSRTAQN 280
            PSDG+KVWWQEFDVTPRQLEEVSNQMLELYEQNRV   P                    K P ++EE  + +         T      +H HPE   +S R  QN
Sbjct:  242 PSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVAPPPSQGNDTEGSSASVVNQRASGKAPGSSEEPPTHENHLAPRQSSTPGHQGYDHPHPEKQNSSQRVPQN 346          
BLAST of DY258311 vs. ExPASy Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 47/105 (44.76%), Postives = 55/105 (52.38%), Query Frame = 2
Query:    2 PSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPXXXXXXXXXXXXXXXXHRPQKTPAAAEE----QASKQTSSRSAT--------EHSHPENNGASSRTAQN 280
            PSDG+KVWWQEFDVTPRQLEEVSNQMLELYEQN                      Q+    +EE      SKQ+SS+ +T        EHS+ E      +  QN
Sbjct:  241 PSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNCAAQAQPSHGNEAEGSSASVPNQRVSVKSEETPLPHQSKQSSSQHSTGAPSHHGVEHSNLEKQTVDQKMLQN 345          
The following BLAST results are available for this feature:
BLAST of DY258311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CCT14_ARATH1.596e-2047.57Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=... [more]
CCT15_ARATH4.717e-1951.89Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=... [more]
CCT13_ORYSJ5.766e-1745.71Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT14_ORYSJ4.569e-1444.76Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1AE10FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258311 ID=DY258311; Name=DY258311; organism=Citrus clementina; type=EST; length=597bp
TCCATCTGATGGTGATAAGGTCTGGTGGCAAGAATTTGATGTCACCCCAC
GCCAATTGGAGGAGGTTAGCAATCAAATGTTGGAACTTTACGAGCAAAAC
AGAGTGCCTCAATCTCAGGGTAGTGAAGTGGAAGGAAGTGCTGGTGGTGC
GTCAAGTCATCGTCCGCAAAAAACTCCAGCAGCAGCTGAGGAACAGGCTT
CAAAGCAAACCTCATCCCGTTCAGCAACTGAACACTCACATCCAGAAAAC
AATGGAGCATCATCAAGAACAGCCCAAAATATCAAAGTAATGATGAATGG
AGCGGGGAAATGGGTAGTGTTATTACTGATCCACAAGCAGATGCTGAAAC
CNAAGATAATCAGCATCATGAGCAGTTGTCTCAAAAAGAAAACGTCAGAG
AAATCCTAAATAAACCCAGTTCGCCTCCGAACCGATTTGCTAAAACCAAG
AAGGGGCTGGAAGAAGGGATAACAAGCCAAAACCGGGAAAAGGGAAGGGA
GAAAGGTGCCCCCCAAAAACTTAGCGCCCTTGGGGGGCCAAAAACCGGAA
ATTTCGGAAAAGGGCCCGGGGGGGTCCCCCCCCCCAAAAAAAATTTT
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