DY258319

Overview
NameDY258319
Unique NameDY258319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14387 contig Ccv1_Contig14387:214..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258319 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  339 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 566
            LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK CLE WL +LN  CPLCR+PL+P
Sbjct:   49 LSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
The following BLAST results are available for this feature:
BLAST of DY258319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHA2B_ARATH1.568e-1242.11RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1AF11FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258319 ID=DY258319; Name=DY258319; organism=Citrus clementina; type=EST; length=830bp
AAAAATTTTCGCTTCTCAGATATCAAGGAAGCAGTCACAAGATTTTGCTT
GATTTCTGATTCAGTATCTCAAATTTAGTACAAAATTGGGTATCTGTAAA
TTTAAAATTTTAATTCGAAAACATGGGCCTCGCTAGTATGCCGTCCGCAT
CAAAAGGAATGCTATGCTTGATTCTAATGAACACTGCTATGTCAATCTCA
ATCGTCAAAGGCATATTCAGATCAATCCTCAAGGTTGTCGGTTTCCAGCT
TGCTGACTCATCATCGCCACCGTATTCATATTTCGCATCACCTCAAGTTG
TCTCCGCAGAGCCATATGATGTAAATTTAAGTCCTCCCCTTAGCTATGTT
GAGGAGTTCCGAAACCAGAACCCTGCAATCAAGTATGAAACATTGCTCCA
TTGTGAAGATGCAGAGCATGACTGTTCTGTGTGTTTGACCGAGTTTGAGC
CTCAATCTGATATCAATAACTTGTCTTGTGGACATTTGTTTCATAAAGTG
TGCTTGGAGAAGTGGCTGGACTATTTGAATGTTACGTGCCCGCTTTGCAG
GACACCTCTAATTCCTGAGTTTGAAGACGATCCCTCTTGCTTCTGGTGAG
AGTGTTTTATGAGCTTGTCTAGTTGAGGAGACTTCTATGTACAGCATGTA
GTGTACAGGTATTTACTAATGCATCGGCCGGAGTGTAGTGTTGTTTACAC
GCCTTCTATGTGTGAGTTAAATCTCGAGTCCTTTTGAAGGCTGGTTGAGA
AAACCAAAATTCCGTTGGAAATATTGTGAGGTTTCTGGGTGTTTTATGGG
ATATAATCTGACTTTTTGATCTTCACCTTT
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