DY258335

Overview
NameDY258335
Unique NameDY258335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length907
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1090 contig Ccv1_Contig1090:1..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258335 vs. ExPASy Swiss-Prot
Match: TBL3_HUMAN (Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.089e-25
Identity = 62/190 (32.63%), Postives = 97/190 (51.05%), Query Frame = 2
Query:    5 HEDKIWAFAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEP 574
            HEDK+W     +  +   TG SD+ V LW D T              V+R QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++  +G+   LE L+PYT+RHF R+ R +++   LD+    M +  P
Sbjct:  604 HEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAEQAEEQARQEEQVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATMLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAALEALLPYTERHFQRLSRTLQAAAFLDFLWHNMKLPVP 793          
BLAST of DY258335 vs. ExPASy Swiss-Prot
Match: TBL3_RAT (Transducin beta-like protein 3 OS=Rattus norvegicus GN=Tbl3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.423e-25
Identity = 60/187 (32.09%), Postives = 96/187 (51.34%), Query Frame = 2
Query:    5 HEDKIWAFAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 565
            HEDK+W     +  +   TGGSD+ + LW D T              V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+   LE L+PYT+RHF R+ R +++   LD+    M +
Sbjct:  604 HEDKVWGLHCSRLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATVLRLRRDQKEALLRFCITWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGALEALLPYTERHFQRLSRTLQAATFLDFLWHNMKL 790          
BLAST of DY258335 vs. ExPASy Swiss-Prot
Match: TBL3_BOVIN (Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.427e-25
Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 2
Query:    5 HEDKIWAFAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 565
            HEDK+W     +  +   TG SD+ V LW D T              V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  E+  ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+   LEGL+PYT+RHF R+ R++++   LD+    M +
Sbjct:  604 HEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAEQAEEQAKREEQVVKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLETTVLQLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPDELLTYDGVRASLEGLLPYTERHFQRLSRMLQAATFLDFLWHNMKL 790          
BLAST of DY258335 vs. ExPASy Swiss-Prot
Match: TBL3_MOUSE (Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.169e-25
Identity = 60/187 (32.09%), Postives = 96/187 (51.34%), Query Frame = 2
Query:    5 HEDKIWAFAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 565
            HEDK+W     +  +   TGGSD+ + LW D T              V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+   LE L+PYT+RHF R+ R +++   LD+    M +
Sbjct:  604 HEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATVLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGSLEALLPYTERHFQRLSRTLQAATFLDFLWHNMKL 790          
BLAST of DY258335 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.966e-23
Identity = 58/188 (30.85%), Postives = 95/188 (50.53%), Query Frame = 2
Query:    5 HEDKIWAFAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKRE------AELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTL 550
            HED++WA A      +  +GG+DA+V++W D T              V   Q L N     D+ +AI +A  L RPH L  LF  V               ++  L  L   ++  L + +R+WNT  K   VAQ +L  L + + P  ++++ GI D+L+ +IPYT RH +R++ L+  ++++DY +
Sbjct:  590 HEDRVWALASRFDGSLLVSGGADAVVSVWKDVTEEYIAKQAEELERRVEAEQLLSNFEQTEDWQQAIALALSLDRPHGLLRLFERVMTAPHQPNSITGNKDVDNVLVQLPDHQLIILFQRIRDWNTNSKTSMVAQRLLRLLLHSYSPEHLLKLSGIKDILDSMIPYTDRHLARVNDLIEDSYIVDYVI 777          
BLAST of DY258335 vs. ExPASy Swiss-Prot
Match: UTP13_YEAST (U3 small nucleolar RNA-associated protein 13 OS=Saccharomyces cerevisiae GN=UTP13 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.167e-19
Identity = 57/198 (28.79%), Postives = 96/198 (48.48%), Query Frame = 2
Query:    5 HEDKIWAFAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFA-----SVCRKREAELQIE--------KALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGM 559
            H +++WA +     +M  +  +D +   W D T              V + Q L+N +   D+T A  +A  L  P +LF +       S  R+   E +IE        +A+  L  E++  L++  R+WNT  K   +AQ  +  +   H   ++ EI G+  +++ +IPYTQRHF+R+D LV  +++LDY L  M
Sbjct:  616 HNNRLWALSTMNDGDMIVSADADGVFQFWKDCTEQEIEEEQEKAKLQVEQEQSLQNYMSKGDWTNAFLLAMTLDHPMRLFNVLKRALGESRSRQDTEEGKIEVIFNEELDQAISILNDEQLILLMKRCRDWNTNAKTHTIAQRTIRCILMHHNIAKLSEIPGMVKIVDAIIPYTQRHFTRVDNLVEQSYILDYALVEM 813          
The following BLAST results are available for this feature:
BLAST of DY258335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TBL3_HUMAN1.089e-2532.63Transducin beta-like protein 3 OS=Homo sapiens GN=... [more]
TBL3_RAT1.423e-2532.09Transducin beta-like protein 3 OS=Rattus norvegicu... [more]
TBL3_BOVIN2.427e-2532.09Transducin beta-like protein 3 OS=Bos taurus GN=TB... [more]
TBL3_MOUSE3.169e-2532.09Transducin beta-like protein 3 OS=Mus musculus GN=... [more]
UTP13_SCHPO2.966e-2330.85Probable U3 small nucleolar RNA-associated protein... [more]
UTP13_YEAST1.167e-1928.79U3 small nucleolar RNA-associated protein 13 OS=Sa... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BA02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258335 ID=DY258335; Name=DY258335; organism=Citrus clementina; type=EST; length=907bp
TAAGCACGAGGACAAGATTTGGGCCTTTGCTGTCGGGAAGAAGACAGAAA
TGTTTGCAACTGGTGGCAGTGATGCTCTTGTTAATCTGTGGCATGATTCA
ACTGCTGCTGAGAGAGAGGAAGCTTTCCGAAAAGAGGAAGAAGCGGTTTT
GAGAGGTCAGGAATTAGAAAATGCTGTGTTGGATGCTGACTACACTAAAG
CAATCCAAGTAGCATTTGAACTTCGCAGGCCTCATAAACTTTTTGAGTTA
TTTGCCAGTGTGTGCAGGAAGAGAGAAGCAGAACTTCAGATAGAGAAAGC
CCTTCATGCACTGGGCAAGGAAGAGATTCGTCAACTTCTTGAGTATGTTC
GAGAATGGAATACAAAGCCAAAGTTGTGTCATGTTGCGCAATTTGTGCTA
TTCCAGCTTTTCAACATCCATCCTCCTACAGAGATTATTGAGATAAAAGG
CATTTCCGATGTTCTAGAAGGCCTCATTCCATACACTCAACGGCATTTCA
GCAGGATTGATAGACTTGTAAGGAGTACATTTTTGTTGGACTATACTTTA
ACAGGAATGTCAGTTATCGAACCAGATACCGAAGCAAGAGAGGTGAAGGC
CGAATCGTTGGTAGACTCTAACGTCCACCAGGATGCTAATGATGTGGTTA
TAACAGAAAATGTCGCGAAGGAGCAAATAGAGTCAGAAGGAAAGACTGCT
TCAAAGAAACGAAAATCACACAAATCAAGAGAGAGCTCTCATAAGAAAGA
AAGGAGAGCTGATCAGACAAATGCAGCGGCTATATCATTGCAGGCATAAA
CAAAATGCGGAGATGTTTTGCCCCTGTATTTGTTAGTTTATAACTAATTA
GCCCTGTATGTATTTTATTAGGTTAATTATGAAAGTGGTTTCCCCGGTTG
CCTTCCC
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