DY258348

Overview
NameDY258348
Unique NameDY258348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1093 contig Ccv1_Contig1093:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP2_ARATH (Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana GN=PARP2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.325e-60
Identity = 111/138 (80.43%), Postives = 124/138 (89.86%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCYA+  A  GVLLLCEVALGDM+ELLY++Y+AD LP GKLSTKGVG+TAP+P EA+TLEDGV+VPLGKP E+  SKG LLYNEYIVYNV+QI+MRYV+QV F YK
Sbjct:  499 QGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYANTGANDGVLLLCEVALGDMNELLYSDYNADNLPPGKLSTKGVGKTAPNPSEAQTLEDGVVVPLGKPVERSCSKGMLLYNEYIVYNVEQIKMRYVIQVKFNYK 636          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP2_MAIZE (Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.231e-56
Identity = 103/138 (74.64%), Postives = 122/138 (88.41%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCYAS +  +GVLLLCEVALGDM+ELL A+YDA+ LP GKL +KGVGQTAP+ +E++  +DGV+VPLG+PK++ + +G LLYNEYIVYNVDQIRMRYV+ VNF +K
Sbjct:  514 QGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGDMNELLNADYDANNLPKGKLRSKGVGQTAPNMVESKVADDGVVVPLGEPKQEPSKRGGLLYNEYIVYNVDQIRMRYVLHVNFNFK 651          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PRP2A_ORYSJ (Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa subsp. japonica GN=PARP2-A PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.466e-55
Identity = 102/138 (73.91%), Postives = 120/138 (86.96%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCYAS +  +GVLLLCEVALG+M+ELL A+YDA+ LP GKLSTKGVGQT P+  E++  +DGV+VPLGKPK + + +G LLYNE+IVYNVDQIRMRYV+ V+F +K
Sbjct:  521 QGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGEMNELLNADYDANNLPKGKLSTKGVGQTEPNTAESKITDDGVVVPLGKPKAEPSKRGSLLYNEFIVYNVDQIRMRYVLHVSFNFK 658          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PRP2B_ORYSJ (Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa subsp. japonica GN=PARP2-B PE=3 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.552e-52
Identity = 94/138 (68.12%), Postives = 119/138 (86.23%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP +G+MFGKGVYFADMFSKSANYC AS +  +GV+LLCEVALG+M+ELLY ++ AD LP+GKLSTKGVGQT P+  E++  +DG+++PLGKP++  + +G L+YNEYIVYNVDQIRMRY++ VNF +K
Sbjct:  465 QGLRIAPPEAPISGFMFGKGVYFADMFSKSANYCCASEACKSGVMLLCEVALGEMNELLYGDFGADNLPNGKLSTKGVGQTEPNIAESKITDDGMVIPLGKPEKVPSRRGSLMYNEYIVYNVDQIRMRYILNVNFNFK 602          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_XENLA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38
Identity = 83/138 (60.14%), Postives = 101/138 (73.19%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+A P +  G++LL EVALG+M EL  A+    KLP GK S KG+G+TAPDP  A    DGV VPLGK      S   LLYNEYIVY++ Q+ ++Y++++ F YK
Sbjct:  858 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHAMPGSPIGLILLGEVALGNMHELKAAS-QITKLPKGKHSVKGLGRTAPDP-SATVQLDGVDVPLGKGTSANISDTSLLYNEYIVYDIAQVNLKYLLKLKFNYK 993          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP_SARPE (Poly [ADP-ribose] polymerase OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 78/137 (56.93%), Postives = 100/137 (72.99%), Query Frame = 3
Query:    6 GLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            GL+IAPPEAP TGYMFGKG+YFADM SKSANYC  S   + G++LL EVALGDM E   A Y   KLP+ K S  G G+T P+P E+   EDGV +PLGKP    + K  LLYNE+I+Y++ Q+ ++Y++++NFKYK
Sbjct:  861 GLKIAPPEAPVTGYMFGKGIYFADMVSKSANYCCTSHHNSTGLMLLSEVALGDMMECTAAKY-VTKLPNDKHSCFGRGRTMPNPSESIIREDGVEIPLGKPITNDSLKSSLLYNEFIIYDIAQVNIQYMLRMNFKYK 996          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_CHICK (Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.029e-37
Identity = 82/138 (59.42%), Postives = 101/138 (73.19%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S +   G++LL EVALG+M EL  A++   KLP GK S KG+G+TAPDP    TL DGV VPLG       +   LLYNEYIVY+V Q+ ++Y++++ F YK
Sbjct:  872 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASH-ITKLPKGKHSVKGLGKTAPDPTATTTL-DGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 1007          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_RAT (Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=2 SV=4)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 80/138 (57.97%), Postives = 102/138 (73.91%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S     G++LL EVALG+M EL +A++   KLP GK S KG+G+TAPDP  + TL DGV VPLG       +   LLYNEYIVY++ Q+ ++Y++++ F +K
Sbjct:  875 QGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTAPDPSASITL-DGVEVPLGTGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_ORYSJ (Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.503e-36
Identity = 78/138 (56.52%), Postives = 93/138 (67.39%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFAD+ SKSA YCY       G++LL EVALGDM EL  A    DK P GK STKG+G+T P   E     D V+VP GKP         L+YNEYIVYN  Q++M+Y+++V F +K
Sbjct:  840 QGLRIAPPEAPVTGYMFGKGLYFADLVSKSAQYCYVDRKNPVGLMLLSEVALGDMYELKKAT-SMDKPPRGKHSTKGLGKTVPLESEFAKWRDDVVVPCGKPVPASIKTSELMYNEYIVYNTSQVKMQYLLKVRFHHK 976          
BLAST of DY258348 vs. ExPASy Swiss-Prot
Match: PARP1_MAIZE (Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 77/138 (55.80%), Postives = 94/138 (68.12%), Query Frame = 3
Query:    3 QGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYNVDQIRMRYVVQVNFKYK 416
            QGLRIAPPEAP TGYMFGKG+YFAD+ SKSA YCY   +   G++LL EVALGDM EL  A    DK P GK STKG+G+T P   E     D V+VP GKP         L+YNEYIVYN  Q++M+++++V F +K
Sbjct:  843 QGLRIAPPEAPVTGYMFGKGLYFADLVSKSAQYCYVDRNNPVGLMLLSEVALGDMYELKKAT-SMDKPPRGKHSTKGLGKTVPLESEFVKWRDDVVVPCGKPVPSSIRSSELMYNEYIVYNTSQVKMQFLLKVRFHHK 979          
The following BLAST results are available for this feature:
BLAST of DY258348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PARP2_ARATH3.325e-6080.43Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thal... [more]
PARP2_MAIZE2.231e-5674.64Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP... [more]
PRP2A_ORYSJ2.466e-5573.91Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa s... [more]
PRP2B_ORYSJ2.552e-5268.12Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa s... [more]
PARP1_XENLA1.230e-3860.14Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenop... [more]
PARP_SARPE7.970e-3856.93Poly [ADP-ribose] polymerase OS=Sarcophaga peregri... [more]
PARP1_CHICK3.029e-3759.42Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN... [more]
PARP1_RAT8.812e-3757.97Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicu... [more]
PARP1_ORYSJ1.503e-3656.52Poly [ADP-ribose] polymerase 1 OS=Oryza sativa sub... [more]
PARP1_MAIZE3.349e-3655.80Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258348 ID=DY258348; Name=DY258348; organism=Citrus clementina; type=EST; length=697bp
CTCAAGGTCTACGAATTGCTCCACCTGAAGCGCCTGCAACTGGTTACATG
TTTGGAAAGGGGGTTTATTTTGCTGATATGTTCTCCAAAAGTGCAAATTA
CTGTTATGCTTCTCCTTCTGCTACAGCTGGTGTGCTGCTTTTGTGTGAGG
TTGCACTTGGTGACATGTCTGAGCTCCTGTATGCAAATTATGATGCTGAT
AAGTTGCCAGATGGGAAGCTAAGCACAAAAGGAGTTGGTCAAACTGCCCC
AGATCCATTGGAAGCGGAGACACTTGAAGATGGGGTCATTGTTCCTCTTG
GAAAGCCAAAAGAGCAACTGAACTCCAAGGGTCATTTGTTGTACAATGAG
TACATAGTCTACAATGTGGATCAGATTAGGATGCGCTATGTGGTTCAAGT
GAATTTCAAATATAAATAGACTTGCGTCAGTACGTAATTTTCCAATTTTG
ATAGCAATTTTCTTGCTCTGTAATTTATTATCTAATGGGTAGAAATGATC
TTTTCAAAGTATTGGAATATGATACCTCCTATGTACTCATGCTTGGTTGG
GCAATTAGGAGGGAAAATCAATGGGCCAATTTTGTAACTTTTACCGCATC
CATCGATGTTGTGTATATTGGGAAATTTACGGAGGCACGGGCTGACACTG
ATGATAAACTTAAAAGAAATGAGGAAATAATCTGTCCCTTTTTTTTT
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