DY258368

Overview
NameDY258368
Unique NameDY258368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length802
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig96 contig Ccv1_Contig96:314..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_ARATH (DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.829e-80
Identity = 147/176 (83.52%), Postives = 163/176 (92.61%), Query Frame = 1
Query:    1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKYPTLL 528
            GRL+HQVE M RYYRIPVLLIEFSQDKSFSFQS+SDI DDVTP NIISKLSLLVLHFPRLR++WS SLHATAEIF  LK+NQDEPDE +AIRVGVPSE+GI+END+RAENYNTSAVEFLRRLPGV+D+NYRSIM+ CKSLA+LA LPVE LAELMGG K A++LR+FLDAKYPTLL
Sbjct:  781 GRLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAVEFLRRLPGVSDANYRSIMEKCKSLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956          
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_MOUSE (DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.165e-33
Identity = 78/176 (44.32%), Postives = 108/176 (61.36%), Query Frame = 1
Query:    1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKYPTLL 528
            GRLY Q   M RYYR PVLLIEF   K FS         +++ +++ SKL+LL LHFPRLR++W PS HATAE+F  LK N+ +PD A A+ +   SE  + E+D     YN    +F+ ++PGV   N RS+M+  K++A+LA L +ERL  ++G    A+ L DFL   Y  L+
Sbjct:  740 GRLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET-LPESD----RYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGNAKQLHDFLHTAYADLV 910          
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_HUMAN (DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 5.781e-33
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKY 516
            GRLY Q  +M RYY+ PVLLIEF   K FS  S   +  +++ N+I SKL+LL LHFPRLRI+W PS HATAE+F  LK ++ +PD A A+ +   S     E    +E YN    +FL ++PGV   N RS+M   K++A+LA L  + L  ++G    A+ L DF+   +
Sbjct:  739 GRLYSQCISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADS-----ETLPESEKYNPGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSF 905          
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_CRIGR (DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.894e-32
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKY 516
            GRLY Q   M RYYR PVLLIEF   K FS         +++ +++ SKL+LL LHFPRLR++W PS HATAE+F  LK N+ +PD A A+ +   SE  + E+D     YN    +F+ ++PG+   N  S+M+  K++A+LA L  ERL  ++G    A+ L DFL   Y
Sbjct:  736 GRLYSQCLAMSRYYRRPVLLIEFDAGKPFSLAPRGSFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET-LPESD----KYNPGPQDFVLKMPGINAKNCHSLMNHVKNIAELASLSQERLTSILGHAGNAKQLYDFLHTAY 902          
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: RAD16_SCHPO (DNA repair protein rad16 OS=Schizosaccharomyces pombe GN=rad16 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.884e-25
Identity = 63/157 (40.13%), Postives = 89/157 (56.69%), Query Frame = 1
Query:    1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIM-DGCKSLADLALLPVERLAELMG 468
            GRLY Q E M  YY IPVLLIEF Q +SF+    SD+  ++  N++ SKL LL L FP LRI+WS S + T+ IF  LKA + EPD A A  +G+ +             YN + ++ L  LP +T  NYR++   G K + + +     + +EL+G
Sbjct:  723 GRLYSQCEAMTEYYEIPVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAASIGLEA------GQDSTNTYNQAPLDLLMGLPYITMKNYRNVFYGGVKDIQEASETSERKWSELIG 873          
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_DROME (DNA repair endonuclease XPF OS=Drosophila melanogaster GN=mei-9 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.291e-24
Identity = 68/170 (40.00%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNN--IISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFL 504
            GRLY+Q   M R+Y  P+LLIEF Q+K F  Q    +    +  N  I+ KL LL LHFP+LR+IWSPS +ATA++F  LK  + EPD   A  +G  S++      +   ++N+   +FL RLPGV   N   ++    SL  L L   + L EL+  Q++A+ L D L
Sbjct:  753 GRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQGKFMLSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAALG--SDEPTAGEQL---HFNSGIYDFLLRLPGVHTRNIHGLLRKGGSLRQLLLRSQKELEELLQSQESAKLLYDIL 917          
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_DICDI (DNA repair endonuclease XPF OS=Dictyostelium discoideum GN=ercc4 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.633e-19
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 1
Query:    1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDD-VTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELM 465
            GRL+ Q+E M R Y+ P+LLIEF  ++ F   +  ++  D ++P ++ SKL  L   FPRLR+IWS S + T +I+  +K    EPD         PS   ++      +NYN +A + LR +PGV D N   IMD    L  L+ L +   + +M
Sbjct:  795 GRLFTQIEAMNRIYKNPILLIEFDPNQPFYLVAPDELQKDYLSPFSLPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQIKDGYPEPD---------PSMVNVIPEVNDDQNYNFNAQDVLRTMPGVNDKNINLIMDNVDDLYHLSKLSLSEFSTIM 941          
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: RAD1_YEAST (DNA repair protein RAD1 OS=Saccharomyces cerevisiae GN=RAD1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13
Identity = 54/183 (29.51%), Postives = 86/183 (46.99%), Query Frame = 1
Query:    4 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASD--------------IGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRA--ENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFL 504
            RL +Q + M++YY  P LLIEF + +SFS +  S+              I   ++ + I  KL+ LVL FP L+IIWS S   T  I   LK  +++PD + A+ +G         +  +   +  N S  + L  +PGV+  +Y ++    KS   L  L    + EL+  +     +  FL
Sbjct:  878 RLANQCKKMLKYYAYPTLLIEFDEGQSFSLEPFSERRNYKNKDISTVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAVILGTNKVRSDFNSTAKGLKDGDNESKFKRLLNVPGVSKIDYFNLRKKIKSFNKLQKLSWNEINELINDEDLTDRIYYFL 1060          
The following BLAST results are available for this feature:
BLAST of DY258368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
XPF_ARATH2.829e-8083.52DNA repair endonuclease UVH1 OS=Arabidopsis thalia... [more]
XPF_MOUSE1.165e-3344.32DNA repair endonuclease XPF OS=Mus musculus GN=Erc... [more]
XPF_HUMAN5.781e-3343.60DNA repair endonuclease XPF OS=Homo sapiens GN=ERC... [more]
XPF_CRIGR4.894e-3243.60DNA repair endonuclease XPF OS=Cricetulus griseus ... [more]
RAD16_SCHPO9.884e-2540.13DNA repair protein rad16 OS=Schizosaccharomyces po... [more]
XPF_DROME1.291e-2440.00DNA repair endonuclease XPF OS=Drosophila melanoga... [more]
XPF_DICDI1.633e-1935.90DNA repair endonuclease XPF OS=Dictyostelium disco... [more]
RAD1_YEAST1.025e-1329.51DNA repair protein RAD1 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BE02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258368 ID=DY258368; Name=DY258368; organism=Citrus clementina; type=EST; length=802bp
GGCCGCCTTTATCACCAAGTGGAAACAATGGTCCGCTATTACAGAATACC
TGTTCTTCTGATTGAGTTTTCACAAGACAAAAGCTTTTCATTTCAGTCTG
CAAGTGATATTGGTGATGATGTGACACCAAATAATATTATATCCAAGTTG
TCGCTGCTTGTTCTACATTTTCCTCGCTTGAGAATCATCTGGTCTCCCAG
TTTGCATGCAACTGCTGAAATATTTGCTGCACTGAAAGCAAATCAAGATG
AACCTGACGAGGCAAAGGCAATTAGAGTTGGTGTCCCCTCCGAAGATGGT
ATAGTGGAAAATGATGTGAGAGCCGAAAATTACAATACATCTGCTGTGGA
GTTCCTAAGGCGGCTCCCTGGTGTGACAGATTCAAACTACAGGTCTATAA
TGGATGGATGTAAGAGCTTGGCTGACCTGGCCCTCCTACCAGTAGAAAGG
CTAGCTGAACTAATGGGTGGTCAGAAAGCTGCGCAGACTCTCAGAGATTT
TCTTGATGCCAAGTATCCAACATTACTATAGTACTCACCAAATCTCAACT
GGGACTCTGGAACAGAGGCTGTAAGTAATTTATTCAATGTTGTTTTATTT
TATTTTTCTCATGTGTCATTGTTATTGGTGTAGAGTGGGTAATGAGAGCA
CTTTGCCTTTCCCATTTGTATTGTATTTTTTAGTCATCAAATGTAATTTT
TCTTTTGGAGAGATTAGTTTGCCATTTCACAGGCTTACTAGTTGCTGTTG
TATAAGAAAATGTAACGTCAGAAACTAATGGGAAAAAAATTAAATATTCT
TT
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