DY258368
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_ARATH (DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2) HSP 1 Score: 298.516 bits (763), Expect = 2.829e-80 Identity = 147/176 (83.52%), Postives = 163/176 (92.61%), Query Frame = 1 Query: 1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKYPTLL 528 GRL+HQVE M RYYRIPVLLIEFSQDKSFSFQS+SDI DDVTP NIISKLSLLVLHFPRLR++WS SLHATAEIF LK+NQDEPDE +AIRVGVPSE+GI+END+RAENYNTSAVEFLRRLPGV+D+NYRSIM+ CKSLA+LA LPVE LAELMGG K A++LR+FLDAKYPTLL Sbjct: 781 GRLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAVEFLRRLPGVSDANYRSIMEKCKSLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_MOUSE (DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=3) HSP 1 Score: 143.665 bits (361), Expect = 1.165e-33 Identity = 78/176 (44.32%), Postives = 108/176 (61.36%), Query Frame = 1 Query: 1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKYPTLL 528 GRLY Q M RYYR PVLLIEF K FS +++ +++ SKL+LL LHFPRLR++W PS HATAE+F LK N+ +PD A A+ + SE + E+D YN +F+ ++PGV N RS+M+ K++A+LA L +ERL ++G A+ L DFL Y L+ Sbjct: 740 GRLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET-LPESD----RYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGNAKQLHDFLHTAYADLV 910
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_HUMAN (DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3) HSP 1 Score: 141.354 bits (355), Expect = 5.781e-33 Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKY 516 GRLY Q +M RYY+ PVLLIEF K FS S + +++ N+I SKL+LL LHFPRLRI+W PS HATAE+F LK ++ +PD A A+ + S E +E YN +FL ++PGV N RS+M K++A+LA L + L ++G A+ L DF+ + Sbjct: 739 GRLYSQCISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADS-----ETLPESEKYNPGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSF 905
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_CRIGR (DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2 SV=3) HSP 1 Score: 138.272 bits (347), Expect = 4.894e-32 Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKY 516 GRLY Q M RYYR PVLLIEF K FS +++ +++ SKL+LL LHFPRLR++W PS HATAE+F LK N+ +PD A A+ + SE + E+D YN +F+ ++PG+ N S+M+ K++A+LA L ERL ++G A+ L DFL Y Sbjct: 736 GRLYSQCLAMSRYYRRPVLLIEFDAGKPFSLAPRGSFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET-LPESD----KYNPGPQDFVLKMPGINAKNCHSLMNHVKNIAELASLSQERLTSILGHAGNAKQLYDFLHTAY 902
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: RAD16_SCHPO (DNA repair protein rad16 OS=Schizosaccharomyces pombe GN=rad16 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.884e-25 Identity = 63/157 (40.13%), Postives = 89/157 (56.69%), Query Frame = 1 Query: 1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIM-DGCKSLADLALLPVERLAELMG 468 GRLY Q E M YY IPVLLIEF Q +SF+ SD+ ++ N++ SKL LL L FP LRI+WS S + T+ IF LKA + EPD A A +G+ + YN + ++ L LP +T NYR++ G K + + + + +EL+G Sbjct: 723 GRLYSQCEAMTEYYEIPVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAASIGLEA------GQDSTNTYNQAPLDLLMGLPYITMKNYRNVFYGGVKDIQEASETSERKWSELIG 873
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_DROME (DNA repair endonuclease XPF OS=Drosophila melanogaster GN=mei-9 PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.291e-24 Identity = 68/170 (40.00%), Postives = 96/170 (56.47%), Query Frame = 1 Query: 1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNN--IISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFL 504 GRLY+Q M R+Y P+LLIEF Q+K F Q + + N I+ KL LL LHFP+LR+IWSPS +ATA++F LK + EPD A +G S++ + ++N+ +FL RLPGV N ++ SL L L + L EL+ Q++A+ L D L Sbjct: 753 GRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQGKFMLSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAALG--SDEPTAGEQL---HFNSGIYDFLLRLPGVHTRNIHGLLRKGGSLRQLLLRSQKELEELLQSQESAKLLYDIL 917
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: XPF_DICDI (DNA repair endonuclease XPF OS=Dictyostelium discoideum GN=ercc4 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.633e-19 Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 1 Query: 1 GRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDD-VTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELM 465 GRL+ Q+E M R Y+ P+LLIEF ++ F + ++ D ++P ++ SKL L FPRLR+IWS S + T +I+ +K EPD PS ++ +NYN +A + LR +PGV D N IMD L L+ L + + +M Sbjct: 795 GRLFTQIEAMNRIYKNPILLIEFDPNQPFYLVAPDELQKDYLSPFSLPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQIKDGYPEPD---------PSMVNVIPEVNDDQNYNFNAQDVLRTMPGVNDKNINLIMDNVDDLYHLSKLSLSEFSTIM 941
BLAST of DY258368 vs. ExPASy Swiss-Prot
Match: RAD1_YEAST (DNA repair protein RAD1 OS=Saccharomyces cerevisiae GN=RAD1 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13 Identity = 54/183 (29.51%), Postives = 86/183 (46.99%), Query Frame = 1 Query: 4 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASD--------------IGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRA--ENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFL 504 RL +Q + M++YY P LLIEF + +SFS + S+ I ++ + I KL+ LVL FP L+IIWS S T I LK +++PD + A+ +G + + + N S + L +PGV+ +Y ++ KS L L + EL+ + + FL Sbjct: 878 RLANQCKKMLKYYAYPTLLIEFDEGQSFSLEPFSERRNYKNKDISTVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAVILGTNKVRSDFNSTAKGLKDGDNESKFKRLLNVPGVSKIDYFNLRKKIKSFNKLQKLSWNEINELINDEDLTDRIYYFL 1060 The following BLAST results are available for this feature:
BLAST of DY258368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258368 ID=DY258368; Name=DY258368; organism=Citrus clementina; type=EST; length=802bpback to top |