DY258379

Overview
NameDY258379
Unique NameDY258379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1168
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258379_ssr1 microsatellite DY258379_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10163 contig Ccv1_Contig10163:28..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258379 vs. ExPASy Swiss-Prot
Match: Y3721_ARATH (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.908e-23
Identity = 82/231 (35.50%), Postives = 115/231 (49.78%), Query Frame = 2 
Query:  152 DSAAAMKMDLSSPFGSNSEKLAIPPS----PVKQAATVNAFR-GLGSKEETFFDSQPWLDSDCEDDFYSVNGDFTPSRGNTPVHHNFAGAPQVNSTSLPDKTPG-SISEPSPTGKKPKLAELFRQISKEGSEDQHVDEQNTQGSQNMANGKTEIRTTILDVLPSANGTPYVSGVNSVCSSERTPNGDSMMEDKPMRS---AQCCLPSFVSCRNS-TDRKKKMS---PAIAV 805
            D+ + +   +   F S  +  +IP +    PVK   + ++ +   GSK+ETFFDSQPWL SD +DDF+SVNGDFTPS GNTP        P+ ++    +K P    S P+P  ++ KL ELFR   +E        E+   GS                   SA  TPY+SG NS     R  N  ++ +++  +S      CLP F SC  S  +R+KKMS   P +AV
Sbjct:   34 DNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSSSKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIRE--------EREESGSS------------------SAISTPYLSGANS-----REFNDTAIEKEEKKKSNWHHHRCLPGFSSCGGSFMERRKKMSSETPVVAV 233
The following BLAST results are available for this feature:
BLAST of DY258379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3721_ARATH1.908e-2335.50Uncharacterized protein At3g27210 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BG09FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258379 ID=DY258379; Name=DY258379; organism=Citrus clementina; type=EST; length=1168bp
CTCTCTCTCTTCTGGTGTCTCTACAGAAGAAGATTTTCTGATGCTAAGAG
CGTCGCTGGCTTCTTAGTTTTATTATACCTTTTGTCAATTTAAATAAAGA
GAATTTAGAGACATGGGTTCGTGCGTATCATCAGCACACAAGAGAACAGC
AGACTCAGCCGCTGCCATGAAAATGGACTTATCATCACCATTTGGGTCCA
ATAGTGAGAAGCTTGCGATTCCACCTTCCCCCGTGAAACAAGCGGCGACA
GTCAACGCGTTTAGAGGCCTTGGTAGTAAAGAGGAAACCTTTTTCGATTC
TCAACCATGGCTAGATTCTGACTGCGAAGATGATTTTTACAGTGTCAATG
GAGATTTTACCCCATCTCGTGGCAATACTCCAGTCCATCACAACTTTGCA
GGGGCTCCTCAAGTCAACAGCACTTCTCTTCCGGACAAAACTCCCGGTTC
CATTTCTGAACCATCCCCAACAGGAAAGAAACCGAAACTAGCTGAACTGT
TCCGGCAAATTTCTAAAGAAGGTTCAGAAGACCAACATGTTGATGAACAA
AACACCCAAGGTAGCCAAAACATGGCCAATGGGAAGACAGAAATTAGGAC
AACTATACTTGATGTACTTCCATCAGCAAATGGTACCCCATATGTTTCTG
GAGTTAACTCTGTGTGTAGTAGTGAAAGGACTCCTAATGGAGATTCTATG
ATGGAGGACAAGCCAATGAGATCGGCACAATGTTGCCTTCCAAGCTTTGT
ATCATGTCGTAATTCTACTGACAGGAAGAAGAAGATGAGTCCTGCCATAG
CTGTAAATGGTTACCTTATATTTTGGCACACAGGACTATGTAGATGGAAG
AGAGTGAGCTCAGATGACGAATCTAAATTACTCATCGTCACAGTCATGTA
AAGTTTATATACCCTTTTTAGCCCTCAGGGGATTTTCGGAGTAAAGGATA
TGTAAAAGGCAGCCAGGATTTGTTGGAATCAAAGGACTCCTGAGGATGGA
AAAGGTAATACCATAATAAAATTTTAAAAACCAAATCCTTAATTGACCCC
ATAAGGAAAACCAACCGGTTAAAAAAACCCGGGGCTTTGTTATAACCATG
TGGGTTTAATTGTTTTTTGCTCTTTTTTTAATTTTCCTTTTGGTCTTAAA
AAATTTTTTTCCCCCGGG
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